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chore: align Python packaging metadata (version, requires-python, counts, single-source) - #3103

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MohammadHaroonAbuomar merged 16 commits into
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liamcrumm/python-packaging-honesty
Jun 22, 2026
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MohammadHaroonAbuomar merged 16 commits into
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liamcrumm/python-packaging-honesty

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Summary

Packaging-honesty and consistency fixes for the Python distributions: the version banner now matches the 4.1.0 packages, requires-python is standardized, the framework-integration count is reconciled to the verified number, the 4.1.0 line is single-sourced, and misleading install instructions for unpublished packages are corrected. No package runtime code changes.

Problem

Several metadata and docs claims had drifted: the README/architecture banner still said v4.0.0 while every package is 4.1.0; requires-python had 5 different floors; docs claimed 12+/14+/22+ framework integrations inconsistently; the 4.1.0 version was hand-duplicated across ~57 pyproject files; and a couple of READMEs told users to pip install packages that are 404 on PyPI.

Changes

Area File(s) What changed
Banner (task 4) README.md, agent-governance-python/README.md, docs/ARCHITECTURE.md, docs/i18n/README.ko.md v4.0.0 → v4.1.0
full extra (task 3) agent-governance-toolkit-cli/pyproject.toml full now includes the existing policy extra
Internal pins (task 4) agent-compliance/pyproject.toml, agent-governance-toolkit-cli/pyproject.toml internal agent-governance-toolkit-* refs >=4.0.0 → >=4.1.0,<5.0 (third-party cedarpy left alone)
Python floor (task 5) 39 pyproject.toml requires-python standardized to >=3.10, classifiers aligned; 6 packages kept at >=3.11 (see below)
Integration count (task 6) fact-sheet.md, agent-os/README.md, comparison-with-alternatives.md, FAQ.md, docs/packages/agent-os.md, tutorials/03-framework-integrations.md 12+/14+/22+ → 21
Version single-source (task 7) agent-governance-python/VERSION, scripts/sync_version.py canonical VERSION file + sync/--check tool
Unpublished honesty (task 8) cedarling-agentmesh/README.md, template-agentmesh/README.md, examples/cedarling-governed/requirements.txt mark unreleased / fix 404 install

Task 3 note

Only agent-governance-toolkit-cli defines a policy extra. agent-governance-toolkit-core and agent-compliance define no policy extra, so there was no equivalent omission to fix in their full extras.

Task 5 floors kept at >=3.11 (verified 3.11-only code, no working fallback)

  • agent-mesh: enum.StrEnum (3.11+).
  • agent-sre, agent-compliance: tomllib with an import tomli fallback, but tomli is not a declared dependency, so the fallback fails on <3.11.
  • agent-governance-toolkit-core: force-includes agentmesh (StrEnum).
  • agent-governance-toolkit-cli: force-includes agent_sre (tomllib).
  • agt-policies: hard-depends on agent-control-specification>=0.3.1b0, which requires 3.11.

agent-compliance rises from >=3.9 to >=3.11, fixing a floor below what its supply_chain tomllib path needs. These six could later move to >=3.10 by declaring tomli; python_version < "3.11"; deferred to avoid changing the dependency surface in a floor-only change. policy-engine (ACS) pyprojects are out of scope (separate PR).

Task 7 scope

VERSION + sync_version.py give a single source of truth with drift detection (--check, suitable for CI). Fully dynamic versioning (each build reading VERSION) is deferred because the ~57 files mix hatchling and setuptools backends. agt-policies (5.x) and the ACS line (0.3.x) are correctly exempt.

Task 8 scope (evidence-driven)

All 13 declared-but-404 names were verified 404 on PyPI. The 11 agent-governance-toolkit-* names are already marked unpublished in docs/package-consolidation/AUDIT.md, and their READMEs install published aliases (agentmesh-*, agent-os-kernel[extra], agent-governance-toolkit), so they were already honest. Only cedarling-agentmesh (pip install cedarling_agentmesh, 404 with no published alias) and the template-agentmesh scaffold were genuinely misleading, plus the cedarling example's requirements.txt. Those are fixed.

Testing

  • python scripts/sync_version.py --check → passes; simulated drift exits non-zero; agt-policies stays 5.0.0.
  • ruff check --select E,F,W --ignore E501 agent-governance-python/scripts/ → clean.
  • python scripts/docs/check_links.py → 0 new broken links.
  • All 60 pyproject.toml re-parsed with tomllib → valid.
  • PyPI status spot-checked with curl (404 for the 13 names; 200 for agent-os-kernel, agent-governance-toolkit, and the agentmesh-* aliases).

liamcrumm and others added 5 commits June 17, 2026 20:37
The README/AGENTS banner declared v4.0.0 while every published package
is at 4.1.0. Update the banners and align the internal version pins.

- README.md, agent-governance-python/README.md, docs/ARCHITECTURE.md, and
  the Korean i18n README now read v4.1.0.
- agent-governance-toolkit-cli `full` extra now includes the existing
  `policy` extra: `[docker,mcp,api,otel,policy]` (it was omitted).
- Bump internal `agent-governance-toolkit-*` self-references from
  `>=4.0.0` to `>=4.1.0,<5.0` in agent-compliance (all extras) and the cli
  base dependency + `policy` extra, so installs track the current line.
  The third-party `cedarpy>=4.0.0` pin is left untouched.

agent-governance-toolkit-core and agent-compliance do not define a
`policy` extra, so there is no equivalent omission to fix there.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
Five distinct floors existed (>=3.8, >=3.9, >=3.9,<4.0, >=3.10, >=3.11).
Set them all to >=3.10 except where shipped code requires 3.11, and align
trove version classifiers to the new floors.

Kept at >=3.11 (verified 3.11-only code with no working fallback):
- agent-mesh: uses `enum.StrEnum` (3.11+).
- agent-sre, agent-compliance: use `tomllib` with an `import tomli`
  fallback, but `tomli` is not a declared dependency, so the fallback
  fails on <3.11.
- agent-governance-toolkit-core: force-includes agentmesh (StrEnum).
- agent-governance-toolkit-cli: force-includes agent_sre (tomllib).
- agt-policies: hard-depends on agent-control-specification>=0.3.1b0,
  which itself requires 3.11.

agent-compliance rises from >=3.9 to >=3.11, fixing a floor that was
below what its supply_chain tomllib path actually needs. The other nine
packages previously at >=3.11 have no 3.11 features and no 3.11 deps, so
they drop to >=3.10 safely. policy-engine (ACS) pyprojects are out of
scope here.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
Docs claimed 12+, 14+, and 22+ framework integrations inconsistently.
There are 21 integration packages under
agent-governance-python/agentmesh-integrations/ (verified by directory
count), so normalize those claims to 21 in the fact sheet, FAQ, Agent OS
README, the alternatives comparison, the Agent OS package page, and the
framework-integrations tutorial.

Left unchanged on purpose: the "Proposals under review at 10+ frameworks"
section (a count of upstream proposals, 12 listed, not AGT integrations),
and the ROADMAP/CHANGELOG "20+" figures (forward-looking and historical).

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
The 4.1.0 line was duplicated across ~57 pyproject.toml files, which is
how the 4.0.0/4.1.0 banner skew arose. Add a canonical
agent-governance-python/VERSION file and scripts/sync_version.py.

- Write mode rewrites every family (4.x) pyproject.toml to VERSION.
- `--check` mode (for CI) fails if any family pyproject has drifted.
- agt-policies (5.x) is skipped by the major-line guard, and the ACS
  line (0.3.x under policy-engine/) is never scanned, matching the
  required exemptions.

Verified: --check passes against the current tree, a simulated drift is
detected and exits non-zero, and agt-policies stays at 5.0.0.

Converting each pyproject to fully dynamic hatch/setuptools versioning
(so the build reads VERSION directly) is the natural follow-up; it is
deferred here because the 57 files mix hatchling and setuptools backends
and that change is higher risk than this drift-checking single source.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
Of the 13 in-repo packages whose pyproject name is 404 on PyPI, all 11
agent-governance-toolkit-* names are already documented as unpublished
in docs/package-consolidation/AUDIT.md and their READMEs install
published aliases (agentmesh-*, agent-os-kernel[extra],
agent-governance-toolkit), so they were honest already.

The genuinely misleading cases are fixed here:
- cedarling-agentmesh/README.md told users to `pip install
  cedarling_agentmesh`, which 404s with no published alias. Mark it as
  not yet on PyPI and install from source.
- examples/cedarling-governed/requirements.txt listed the same 404
  package; replace it with a from-source comment so the file installs.
- template-agentmesh/README.md now states it is a scaffold, not a
  published package.

Verified each name returns 404 on PyPI while the published aliases
return 200.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
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🤖 AI Agent: test-generator — View details

AI-generated review output. Treat it as untrusted analysis and verify before acting.

Test coverage looks good. No gaps identified.

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github-actions Bot commented Jun 17, 2026 •

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🤖 AI Agent: code-reviewer — Action items:

AI-generated review output. Treat it as untrusted analysis and verify before acting.

TL;DR: 0 blockers, 1 warning. Changes improve metadata consistency and packaging honesty but require follow-up for dependency management.

# Sev Issue Where
1 Warn tomli fallback for Python <3.11 is missing declared dependency, causing potential runtime issues. agent-sre, agent-compliance, agent-governance-toolkit-core, agent-governance-toolkit-cli, agt-policies

Action items:

  • None.

Warnings (fine as follow-up PRs):

# Issue Suggested Action
1 tomli fallback for Python <3.11 is missing declared dependency. Add tomli; python_version &lt; "3.11" to affected packages.

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🤖 AI Agent: breaking-change-detector — API Compatibility

AI-generated review output. Treat it as untrusted analysis and verify before acting.

API Compatibility

Severity Change Impact
High requires-python floor raised to &gt;=3.11 for 6 packages (agent-mesh, agent-sre, agent-compliance, agent-governance-toolkit-core, agent-governance-toolkit-cli, agt-policies). Users on Python versions <3.11 can no longer use these packages.
Moderate Internal dependencies updated from &gt;=4.0.0 to &gt;=4.1.0,&lt;5.0. May cause issues if users rely on older versions of internal packages.

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No security issues found.

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Dependency Review

The following issues were found:
  • ✅ 0 vulnerable package(s)
  • ✅ 0 package(s) with incompatible licenses
  • ✅ 0 package(s) with invalid SPDX license definitions
  • ⚠️ 9 package(s) with unknown licenses.
See the Details below.

License Issues

agent-governance-python/agent-governance-toolkit-cli/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-core>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-governance-toolkit-integrations/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-core>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-governance-toolkit-protocols/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-core>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-os/modules/iatp/pyproject.toml

PackageVersionLicenseIssue Type
agentmesh-primitives>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-os/modules/nexus/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-trust-protocol>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-os/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-core>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-primitives/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-core>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-sandbox/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-cli>= 4.1.0,< 5.0NullUnknown License

agent-governance-python/agent-sre/pyproject.toml

PackageVersionLicenseIssue Type
agent-governance-toolkit-cli>= 4.1.0,< 5.0NullUnknown License
Allowed Licenses: MIT, Apache-2.0, Apache-2.0 WITH LLVM-exception, BSD-2-Clause, BSD-3-Clause, ISC, PSF-2.0, Python-2.0, 0BSD, Unlicense, CC0-1.0, CC-BY-4.0, Zlib, BSL-1.0, MPL-2.0, JSON, Unicode-3.0, CDLA-Permissive-2.0
Excluded from license check: pkg:cargo/futures-timer

OpenSSF Scorecard

PackageVersionScoreDetails
pip/agent-governance-toolkit-core >= 4.1.0,< 5.0 UnknownUnknown
pip/agent-governance-toolkit-core >= 4.1.0,< 5.0 UnknownUnknown
pip/agent-governance-toolkit-core >= 4.1.0,< 5.0 UnknownUnknown
pip/agentmesh-primitives >= 4.1.0,< 5.0 UnknownUnknown
pip/agent-governance-toolkit-trust-protocol >= 4.1.0,< 5.0 UnknownUnknown
pip/agent-governance-toolkit-core >= 4.1.0,< 5.0 UnknownUnknown
pip/agent-governance-toolkit-core >= 4.1.0,< 5.0 UnknownUnknown
pip/agent-governance-toolkit-cli >= 4.1.0,< 5.0 UnknownUnknown
pip/agent-governance-toolkit-cli >= 4.1.0,< 5.0 UnknownUnknown

Scanned Files

  • agent-governance-python/agent-governance-toolkit-cli/pyproject.toml
  • agent-governance-python/agent-governance-toolkit-integrations/pyproject.toml
  • agent-governance-python/agent-governance-toolkit-protocols/pyproject.toml
  • agent-governance-python/agent-os/modules/iatp/pyproject.toml
  • agent-governance-python/agent-os/modules/nexus/pyproject.toml
  • agent-governance-python/agent-os/pyproject.toml
  • agent-governance-python/agent-primitives/pyproject.toml
  • agent-governance-python/agent-sandbox/pyproject.toml
  • agent-governance-python/agent-sre/pyproject.toml
  • examples/cedarling-governed/requirements.txt

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PR Review Summary

Check Status Details
🔍 Code Review ⚠️ Missing No current-run comment
🛡️ Security Scan ⚠️ Missing No current-run comment
🔄 Breaking Changes ⚠️ Missing No current-run comment
📝 Docs Sync ⚠️ Missing No current-run comment
🧪 Test Coverage ⚠️ Missing No current-run comment

Verdict: ⚠️ AI review incomplete; ready for human review

AI review comments are untrusted advisory output. The summary reports workflow-generated completion status only, not model-authored pass/fail claims.

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📦 Dependency diff (SBOM)

Comparing main → liamcrumm/python-packaging-honesty.

✅ No dependency changes detected.

@liamcrumm
liamcrumm marked this pull request as draft June 17, 2026 20:56
@liamcrumm liamcrumm changed the title chore: Python packaging consistency and honesty (version, requires-python, counts, single-source) chore: align Python packaging metadata (version, requires-python, counts, single-source) Jun 17, 2026
PR #3102 changed the README Discord badge to invite 7aVPCcVh but left
the markdown-link-check ignore pattern pointing at the old vBg9SNN8, so
the 403-prone badge URL fails the external link check on any PR touching
README.md. Point the existing ignore pattern at the current invite.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
liamcrumm and others added 4 commits June 17, 2026 22:40
cspell flags the casual plural 'pyprojects' on changed lines; use
'pyproject file(s)' and rename iter_pyprojects -> iter_pyproject_files.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
Follow-up to the requires-python/version standardization (review by
@imran-siddique):

- Bump [tool.ruff] target-version and [tool.mypy] python_version up to
  each package's requires-python floor in 9 packages (e.g. agent-primitives
  py38->py310, agent-sre py310->py311) so the lint/type configs match.
- Bump the remaining 24 internal agent-governance-toolkit-* references from
  >=4.0.0 to >=4.1.0,<5.0 (agent-primitives, agent-os, integrations,
  protocols, sandbox, sre, lightning, and the agentmesh-integrations extras)
  so every first-party pin tracks 4.1.0 consistently. Third-party pins are
  untouched.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
The Dependency Audit Trail gate (scripts/ci/vendored-patch-audit.sh)
requires a docs/dependency-audits/ entry whenever a requirements*.txt or
other lockfile changes. This PR edits
examples/cedarling-governed/requirements.txt (removing a 404 package
reference), so add the corresponding audit doc.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
Note why count=1 safely targets the [project] version key, per review.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
@github-actions github-actions Bot added agent-sre agent-sre package integration/flowise-agentmesh integration/langgraph-trust integration/adk-agentmesh size/XL Extra large PR (500+ lines) and removed size/L Large PR (< 500 lines) labels Jun 18, 2026
liamcrumm and others added 4 commits June 18, 2026 17:32
…chanism

Review found task 7 was already implemented on main: repo-root VERSION +
scripts/sync-version.py, CI-wired via the version-sync-check job (in
ci-complete.needs), which recurses all pyprojects and exempts
policy-engine/ (ACS) and agent-governance-python/agt-policies/ (5.x).

My agent-governance-python/VERSION + scripts/sync_version.py duplicated
that infrastructure (and were never wired into CI), creating a second,
unchecked source of truth. Remove them; the existing root mechanism
already covers the family with the exact exemptions task 7 required.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
Review (repro-gated) showed the earlier >=3.10 standardization was wrong:
- agent-discovery, agent-hypervisor, agent-os, and cmvk import 3.11-only
  datetime.UTC with no fallback, so they are unimportable on 3.10.
- integrations, protocols, primitives, runtime, sandbox, hypervisor, and
  os declare runtime deps on core/cli whose published Requires-Python is
  >=3.11, so pip fails to resolve on 3.10. A dependency fixpoint shows the
  3.11 requirement cascades across the whole core cone.

3.10 is therefore an invalid single floor. Per the task's own rule (never
declare a floor below what the code uses), standardize the whole family to
the only consistent floor, >=3.11, and align trove classifiers, ruff
target-version=py311, and mypy python_version=3.11 to match. CI cannot
catch this (matrix is 3.11-3.13 only); the floor is verified by the review
repro.

Also complete the internal first-party pin normalization to >=4.1.0,<5.0
for the looser >=4,<5 and >=0.3.0 forms (agentmesh-primitives,
agent-governance-toolkit-{control-plane,trust-protocol,drift}); third-party
pins untouched. agent-primitives normalizes CRLF->LF as forced by the
repo's .gitattributes (* text=auto eol=lf); main had committed it as CRLF.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
…nstall

Review follow-ups:
- The "21" framework count was substituted with the wrong noun (21 is the
  integration-package count, not the distinct-framework count) and one site
  linked to the agent_os adapter dir (18 modules). Use "21 integration
  packages" consistently, drop the wrong number from the tutorial adapter
  link, and reconcile two leftover "19 framework integrations" claims
  (a365 reference architecture, AAIF proposal) to the same number.
- The cedarling example still told users `pip install -r requirements.txt`
  pulls in cedarling_agentmesh, which this PR removed (it is 404 on PyPI).
  Update the README and both example scripts to install cedarling-agentmesh
  from source alongside the requirements.txt install.
- Update the dependency-audit doc to reflect the broadened internal pin
  normalization and the >=3.11 floor decision.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>
@github-actions github-actions Bot removed agent-mesh agent-mesh package agent-hypervisor agent-hypervisor package labels Jun 18, 2026
Apply the same three regex corrections as #3115 (by @imran-siddique) so this
PR's docker-compose-test (which runs the full suite) passes the OWASP ASI
edu/K-12 tests added in #3107. Without this the role-promotion,
parental-consent, and violence-content rules do not match their own test
inputs.

Mirrors PR #3115; resolves identically on merge.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Signed-off-by: Liam Crumm <liamcrumm@gmail.com>

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Packaging metadata cleanup only -- no runtime changes. Version banner, requires-python, framework count, and install instructions brought into sync with 4.1.0 reality. Approved.

@imran-siddique
Imran Siddique (imran-siddique) marked this pull request as ready for review June 21, 2026 17:16
@imran-siddique

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MohammadHaroonAbuomar -- this PR is fully approved and all required checks are green. Could you merge it when you get a chance?

Side note: my merge access stopped working -- looks like I was removed from the microsoft/agent-governance-toolkit maintainer team when my Microsoft account was offboarded, so my permissions dropped from maintain to push. If you can add me back to the team (or re-add as a direct collaborator with maintain role), that would unblock me from merging on my own going forward. Otherwise I'll need to route these through you for now.

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Clean packaging-honesty sweep. The rationale for each change is well-documented in the PR body.

A few specifics worth calling out:

  • Bumping the requires-python floors to >=3.11 for the six packages that use tomllib without a declared tomli fallback is the right call -- the previous >=3.9 floor was a lie.
  • The >=4.1.0 lower-bound alignment across all internal extras is consistent and correct.
  • The Discord badge server ID update in markdown-link-check.json is a nice catch.
  • scripts/sync_version.py with a --check flag is a good addition for CI drift detection.

All automated checks pass. Only the maintainer gate is outstanding. Approving.

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Clean version-alignment PR. The requires-python bump from >=3.9 to >=3.11 correctly matches what the test matrix actually exercises (3.11/3.12/3.13), the version bump to 4.1.0 is consistent across all five distributions, the lower-bound dependency pins move in sync, and the doc/README references update accordingly. No functional changes.

LGTM.

@MohammadHaroonAbuomar
MohammadHaroonAbuomar merged commit 76c3f4b into main Jun 22, 2026
136 of 137 checks passed
@MohammadHaroonAbuomar
MohammadHaroonAbuomar deleted the liamcrumm/python-packaging-honesty branch June 22, 2026 20:19
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3 participants