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Build, Test and Deploy #344
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| name: Build, Test and Deploy | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| schedule: | |
| - cron: '0 0 * * *' | |
| jobs: | |
| linux-build-and-test: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Set Up Conda Environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: inference | |
| environment-file: ./environment.yml | |
| - name: flake8 | |
| shell: bash -l {0} | |
| run: | | |
| conda activate inference | |
| flake8 . --count --exit-zero --statistics | |
| - name: mypy | |
| shell: bash -l {0} | |
| run: | | |
| conda activate inference | |
| find . -type f -name "*.py" | xargs mypy | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| env: | |
| CUSTOMCONNSTR_AZUREML_SERVICE_PRINCIPAL_SECRET: ${{ secrets.CUSTOMCONNSTR_AZUREML_SERVICE_PRINCIPAL_SECRET }} | |
| CUSTOMCONNSTR_API_AUTH_SECRET: ${{ secrets.CUSTOMCONNSTR_API_AUTH_SECRET }} | |
| CLUSTER: "training-nc12" | |
| WORKSPACE_NAME: "InnerEye-DeepLearning" | |
| EXPERIMENT_NAME: "api_inference" | |
| RESOURCE_GROUP: "InnerEye-DeepLearning" | |
| SUBSCRIPTION_ID: ${{ secrets.SUBSCRIPTION_ID }} | |
| APPLICATION_ID: ${{ secrets.APPLICATION_ID }} | |
| TENANT_ID: ${{ secrets.TENANT_ID }} | |
| DATASTORE_NAME: "inferencetestimagestore" | |
| IMAGE_DATA_FOLDER: "temp-image-store" | |
| run: | | |
| conda activate inference | |
| pytest --cov=./ --cov-report=html | |
| test-azure-deployment: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Azure Login | |
| uses: Azure/login@v1 | |
| with: | |
| creds: '{"clientId":"${{ secrets.AZURE_CLIENT_ID }}","clientSecret":"${{ secrets.AZURE_CLIENT_SECRET }}","subscriptionId":"${{ secrets.SUBSCRIPTION_ID }}","tenantId":"${{ secrets.TENANT_ID }}"}' | |
| - name: Deploy Azure App Service | |
| uses: azure/CLI@v1 | |
| with: | |
| azcliversion: 2.42.0 | |
| inlineScript: | | |
| az webapp up --name innereyeinferencetest-${{ github.run_id }} --subscription "InnerEye Dev" -g InnerEye-Inference --sku S1 --location ukwest --runtime PYTHON:3.7 | |
| az webapp delete --name innereyeinferencetest-${{ github.run_id }} --subscription "InnerEye Dev" -g InnerEye-Inference |