michalbukowski
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tas-drug Public
Jupyter Python notebook for the tblastn-genomes pipeline output analysis and visualisation
Jupyter Notebook GNU General Public License v3.0 UpdatedFeb 28, 2025 -
mlst-genomes Public
Nextflow pipeline for in silico MLST sequence typing of Staphylococcus aureus genomes
Nextflow GNU General Public License v3.0 UpdatedFeb 28, 2025 -
tblastn-genomes Public
Nextflow pipeline for automated translated BLAST searches in genomic sequences
Nextflow GNU General Public License v3.0 UpdatedFeb 28, 2025 -
dge-ontology Public
Jupyter notebooks for DGE results and ontology analysis and visualisation.
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pfam-genomes Public
Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice
Python GNU General Public License v3.0 UpdatedSep 14, 2024 -
rnaseq-pipeline-2 Public
Simple Nextflow RNA-Seq pipeline
Nextflow GNU General Public License v3.0 UpdatedJan 24, 2024 -
fetch-genomes Public
Download genomes from NCBI GenBank FTP site
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aml-analysis Public
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
Jupyter Notebook GNU General Public License v3.0 UpdatedJul 19, 2023 -
hg-mapping Public
Map reads to the human genome and analyse the mapping results
Nextflow GNU General Public License v3.0 UpdatedJun 17, 2023 -
rnaseq-pipeline-1 Public
Simple Snakemake RNA-Seq pipeline
Python GNU General Public License v3.0 UpdatedMar 21, 2023