Updates to ShowImage

mianalysis · Aug 16, 2024 · 79748c9 · 79748c9
1 parent 6f52f60
commit 79748c9
Show file tree

Hide file tree

Showing 5 changed files with 3 additions and 14 deletions.
diff --git a/...ules/src/main/java/io/github/mianalysis/mia/module/images/process/NormaliseIntensity.java b/...ules/src/main/java/io/github/mianalysis/mia/module/images/process/NormaliseIntensity.java
@@ -328,11 +328,11 @@ public Status process(Workspace workspace) {
             Image outputImage = ImageFactory.createImage(outputImageName, inputImagePlus);
             workspace.addImage(outputImage);
             if (showOutput)
-                outputImage.showImage(outputImageName, LUT.createLutFromColor(Color.WHITE), false, true);
+                outputImage.show(outputImageName, LUT.createLutFromColor(Color.WHITE), false, true);
 
         } else {
             if (showOutput)
-                inputImage.showImage(inputImageName, LUT.createLutFromColor(Color.WHITE), false, true);
+                inputImage.show(inputImageName, LUT.createLutFromColor(Color.WHITE), false, true);
 
         }
 

diff --git a/mia-modules/src/main/java/io/github/mianalysis/mia/module/inputoutput/SaveObjectsAsROIs.java b/mia-modules/src/main/java/io/github/mianalysis/mia/module/inputoutput/SaveObjectsAsROIs.java
@@ -16,7 +16,6 @@
 
 import ij.gui.Roi;
 import ij.io.RoiEncoder;
-import io.github.mianalysis.mia.MIA;
 import io.github.mianalysis.mia.module.Categories;
 import io.github.mianalysis.mia.module.Category;
 import io.github.mianalysis.mia.module.Module;

diff --git a/mia-modules/src/main/java/io/github/mianalysis/mia/module/visualise/ShowImage.java b/mia-modules/src/main/java/io/github/mianalysis/mia/module/visualise/ShowImage.java
@@ -134,7 +134,7 @@ public Status process(Workspace workspace) {
                 break;
         }
 
-        if (showOutput) image.showImage(title,null,normalisation,composite);
+        if (showOutput) image.show(title,null,normalisation,composite);
 
         return Status.PASS;
 

diff --git a/.../java/io/github/mianalysis/mia/module/images/process/binary/BinaryOperations2DMSTest.java b/.../java/io/github/mianalysis/mia/module/images/process/binary/BinaryOperations2DMSTest.java
@@ -191,10 +191,6 @@ public static void runTest(Dimension dimension, Filter filter, Logic logic, int
             assertNotNull(workspace.getImage("Test_output"));
 
             Image outputImage = workspace.getImage("Test_output");
-            // new ImageJ();
-            // expectedImage.showImage();
-            // outputImage.showImage();
-            // IJ.runMacro("waitForUser");
             assertEquals(expectedImage, outputImage);
 
         }

diff --git a/...va/io/github/mianalysis/mia/module/images/process/threshold/LocalAutoThresholdMSTest.java b/...va/io/github/mianalysis/mia/module/images/process/threshold/LocalAutoThresholdMSTest.java
@@ -245,12 +245,6 @@ public static void runTest(Dimension dimension, Threshold threshold, Logic logic
             assertNotNull(workspace.getImage("Test_output"));
 
             Image outputImage = workspace.getImage("Test_output");
-
-            // new ij.ImageJ();
-            // expectedImage.showImage();
-            // outputImage.showImage();
-            // IJ.runMacro("waitForUser");
-
             assertEquals(expectedImage, outputImage);
 
         }