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how to fetch authors and affiliations #7

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VladimirAlexiev opened this issue Jul 2, 2024 · 4 comments
Closed

how to fetch authors and affiliations #7

VladimirAlexiev opened this issue Jul 2, 2024 · 4 comments

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@VladimirAlexiev
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VladimirAlexiev commented Jul 2, 2024

  1. The diagram is a bit misleading since it shows paper->dct:creator->soa:Author but this query returns nothing. It should use some different color (eg red) to show classes that are hosted externally:
PREFIX soa: <https://semopenalex.org/ontology/>
select * {?x a soa:Author}
  1. Authors are linked to SemOpenAlex, where there are 26.5 triples on average per author. Eg this federated query describes the first author:
construct {?x ?p ?o} where {
  {select ?x {[] dct:creator ?x} limit 1}
  {service <https://semopenalex.org/sparql> {?x ?p ?o}}
}

Note: YasGUI doesn't have download format "Turtle" even for CONSTRUCT queries, that's why I show a table.
As you see, there's a plethora of info.

subject predicate object
https://semopenalex.org/author/A5035759008 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://semopenalex.org/ontology/Author
https://semopenalex.org/author/A5035759008 http://purl.org/dc/terms/created 2023-07-21
https://semopenalex.org/author/A5035759008 http://purl.org/dc/terms/modified 2024-05-29
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/citedByCount 2707
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/worksCount 110
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2012
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2013
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2014
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2015
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2016
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2017
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2018
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2019
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2020
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2021
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2022
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2023
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/A5035759008Y2024
https://semopenalex.org/author/A5035759008 http://purl.org/spar/bido/h-index 23
https://semopenalex.org/author/A5035759008 http://xmlns.com/foaf/0.1/name David F. Fouhey
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/2YrMeanCitedness 1.96875
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/i10Index 36
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/alternativeName David F. Fouhey
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/alternativeName D. Fouhey
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/alternativeName David Ford Fouhey
https://semopenalex.org/author/A5035759008 https://semopenalex.org/ontology/alternativeName David Fouhey
https://semopenalex.org/author/A5035759008 http://www.w3.org/ns/org#memberOf https://semopenalex.org/institution/I57206974
https://semopenalex.org/author/A5035759008 http://www.w3.org/ns/org#memberOf https://semopenalex.org/institution/I27837315
https://semopenalex.org/author/A5035759008 http://www.w3.org/ns/org#memberOf https://semopenalex.org/institution/I36672615
https://semopenalex.org/author/A5035759008 https://dbpedia.org/ontology/orcidId https://orcid.org/0000-0001-5028-5161
  1. This fetches the data of the 3 orgs of this first author:
construct {?org ?p ?o} where {
  {select ?x {[] dct:creator ?x} limit 1}
  {service <https://semopenalex.org/sparql> {
      ?x org:memberOf ?org.
      ?org ?p ?o
  }}
}

Again there's a plethora of info:

subject predicate object
https://semopenalex.org/institution/I57206974 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://semopenalex.org/ontology/Institution
https://semopenalex.org/institution/I57206974 http://www.w3.org/2002/07/owl#sameAs https://makg.org/entity/57206974
https://semopenalex.org/institution/I57206974 http://www.w3.org/2002/07/owl#sameAs https://www.wikidata.org/wiki/Q49210
https://semopenalex.org/institution/I57206974 http://purl.org/dc/terms/created 2016-06-24
https://semopenalex.org/institution/I57206974 http://purl.org/dc/terms/modified 2024-05-30
https://semopenalex.org/institution/I57206974 http://www.w3.org/2000/01/rdf-schema#seeAlso https://en.wikipedia.org/wiki/New%20York%20University
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/citedByCount 8616587
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/worksCount 229236
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2012
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2013
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2014
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2015
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2016
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2017
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2018
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2019
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2020
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2021
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2022
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2023
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I57206974Y2024
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/magId 57206974
https://semopenalex.org/institution/I57206974 https://dbpedia.org/property/countryCode US
https://semopenalex.org/institution/I57206974 http://xmlns.com/foaf/0.1/name New York University
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/ror https://ror.org/0190ak572
https://semopenalex.org/institution/I57206974 https://dbpedia.org/ontology/alternativeName Universidad de Nueva York
https://semopenalex.org/institution/I57206974 https://dbpedia.org/ontology/alternativeName Université de New York
https://semopenalex.org/institution/I57206974 http://xmlns.com/foaf/0.1/depiction https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/Nyu%20short%20color.svg
https://semopenalex.org/institution/I57206974 http://xmlns.com/foaf/0.1/homepage http://www.nyu.edu/
https://semopenalex.org/institution/I57206974 https://dbpedia.org/ontology/location https://semopenalex.org/geo/I57206974
https://semopenalex.org/institution/I57206974 https://dbpedia.org/property/acronym NYU
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/grid grid.137628.9
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/imageThumbnail https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/Nyu%20short%20color.svg&width=300
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/rorType education
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I258800397
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I120250893
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I36672615
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I2799442855
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I4210123063
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I4210165353
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I4210086933
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I2802707398
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I2800015068
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I4210108985
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I4210163050
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I4210160702
https://semopenalex.org/institution/I57206974 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I42102869
https://semopenalex.org/institution/I27837315 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://semopenalex.org/ontology/Institution
https://semopenalex.org/institution/I27837315 http://www.w3.org/2002/07/owl#sameAs https://makg.org/entity/27837315
https://semopenalex.org/institution/I27837315 http://www.w3.org/2002/07/owl#sameAs https://www.wikidata.org/wiki/Q230492
https://semopenalex.org/institution/I27837315 http://purl.org/dc/terms/created 2016-06-24
https://semopenalex.org/institution/I27837315 http://purl.org/dc/terms/modified 2024-05-29
https://semopenalex.org/institution/I27837315 http://www.w3.org/2000/01/rdf-schema#seeAlso https://en.wikipedia.org/wiki/University%20of%20Michigan
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/citedByCount 17535410
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/worksCount 885687
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2012
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2013
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2014
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2015
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2016
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2017
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2018
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2019
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2020
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2021
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2022
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2023
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I27837315Y2024
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/magId 27837315
https://semopenalex.org/institution/I27837315 https://dbpedia.org/property/countryCode US
https://semopenalex.org/institution/I27837315 http://xmlns.com/foaf/0.1/name University of Michigan–Ann Arbor
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/ror https://ror.org/00jmfr291
https://semopenalex.org/institution/I27837315 https://dbpedia.org/ontology/alternativeName University of Michigan
https://semopenalex.org/institution/I27837315 https://dbpedia.org/ontology/alternativeName UMich
https://semopenalex.org/institution/I27837315 https://dbpedia.org/ontology/alternativeName Université du Michigan
https://semopenalex.org/institution/I27837315 http://xmlns.com/foaf/0.1/depiction https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/University%20of%20Michigan%20logo.svg
https://semopenalex.org/institution/I27837315 http://xmlns.com/foaf/0.1/homepage https://www.umich.edu
https://semopenalex.org/institution/I27837315 https://dbpedia.org/ontology/location https://semopenalex.org/geo/I27837315
https://semopenalex.org/institution/I27837315 https://dbpedia.org/property/acronym UM
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/grid grid.214458.e
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/imageThumbnail https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/University%20of%20Michigan%20logo.svg&width=300
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/rorType education
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I4210163254
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I4210104572
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I4210130704
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/hasChildInstitution https://semopenalex.org/institution/I4210092198
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I2801799315
https://semopenalex.org/institution/I27837315 https://semopenalex.org/ontology/hasAssociatedInstitution https://semopenalex.org/institution/I4210114445
https://semopenalex.org/institution/I36672615 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://semopenalex.org/ontology/Institution
https://semopenalex.org/institution/I36672615 http://www.w3.org/2002/07/owl#sameAs https://makg.org/entity/36672615
https://semopenalex.org/institution/I36672615 http://www.w3.org/2002/07/owl#sameAs https://www.wikidata.org/wiki/Q946028
https://semopenalex.org/institution/I36672615 http://purl.org/dc/terms/created 2016-06-24
https://semopenalex.org/institution/I36672615 http://purl.org/dc/terms/modified 2024-05-30
https://semopenalex.org/institution/I36672615 http://www.w3.org/2000/01/rdf-schema#seeAlso https://en.wikipedia.org/wiki/Courant%20Institute%20of%20Mathematical%20Sciences
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/citedByCount 723289
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/worksCount 14169
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2012
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2013
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2014
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2015
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2016
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2017
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2018
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2019
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2020
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2021
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2022
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2023
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/countsByYear https://semopenalex.org/countsByYear/I36672615Y2024
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/magId 36672615
https://semopenalex.org/institution/I36672615 https://dbpedia.org/property/countryCode US
https://semopenalex.org/institution/I36672615 http://xmlns.com/foaf/0.1/name Courant Institute of Mathematical Sciences
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/ror https://ror.org/037tm7f56
https://semopenalex.org/institution/I36672615 http://xmlns.com/foaf/0.1/depiction https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/WarrenWeaverHall.JPG
https://semopenalex.org/institution/I36672615 http://xmlns.com/foaf/0.1/homepage http://www.cims.nyu.edu/
https://semopenalex.org/institution/I36672615 https://dbpedia.org/ontology/location https://semopenalex.org/geo/I36672615
https://semopenalex.org/institution/I36672615 https://dbpedia.org/property/acronym CIMS
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/grid grid.482020.c
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/imageThumbnail https://commons.wikimedia.org/w/index.php?title=Special:Redirect/file/WarrenWeaverHall.JPG&width=300
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/rorType education
https://semopenalex.org/institution/I36672615 https://semopenalex.org/ontology/hasParentInstitution https://semopenalex.org/institution/I57206974
@VladimirAlexiev
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LPWC and SemOpenAlex are both hosted in GraphDB, and the dumps are available.
So if one loads both into the same GraphDB, one can use Internal Federation to query across the two repos much faster.
(One could also load them to the same repo, but for data management purposes it's better to keep them separate).

@davidlamprecht
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hi @VladimirAlexiev ,
We have already loaded SemOpenALex and LPWC into the same GraphDB in two different Repositories.

@VladimirAlexiev
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@davidlamprecht Then can you show an example of using internal federation from LPWC to SOA?
It will be much faster!

@davidlamprecht
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@VladimirAlexiev I was not aware of internal federation, this is an awesome feature.
You can access the two Repositories via repository:semopenalex and repository:linkedpaperswithcode .

E.g. update your provided Query to and execute it over https://linkedpaperswithcode.com/sparql:

construct {?org ?p ?o} where {
  {select ?x {[] dct:creator ?x} limit 1}
  {service <repository:semopenalex>  {
      ?x <http://www.w3.org/ns/org#memberOf> ?org.
      ?org ?p ?o
  }}
}

Execution time is now 0.05 s.

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