GraphBin2 v1.3.3

• Includes minor bug fixes and code formatting.
• Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.3.2...v1.3.3

GraphBin2 v1.3.2

• Added support to handle MEGAHIT assemblies.
• Includes minor bug fixes and code formatting.
• Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.3.1...v1.3.2

GraphBin2 v1.3.1

• Added support to handle original contigs from metaFlye assemblies.
• Produces individual FASTA files for each bin (including sequences belonging to multiple bins).
• Includes minor bug fixes and code formatting.
• Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.2.3...v1.3.1

GraphBin2 v1.2.3

• Includes minor bug fixes.
• Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.2.2...v1.2.3

GraphBin2 v1.2.2

• Major code refactor to be able to install as a package.
• Replaced setup.py with pyproject.toml.
• Now installable with flit instead of pip.
• Includes minor bug fixes.
• Added Read the Docs documentation.
• Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.2.1...v1.2.2

GraphBin2 v1.2.1

• Replaced argparse with click.
• Added sample testing data.
• Includes minor bug fixes.
• Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.1...v1.2.1

GraphBin2 v1.1

• Added support for Flye long-read assemblies.
• Includes minor bug fixes.
• Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.0...v1.1

Note: We have developed GraphBin2 for Illumina short reads, and the long-read assemblies from Flye might have sparsely connected graphs. This can make the label propagation less effective and may not result in improvements.

GraphBin2 v1.0

• This is the first stable release of GraphBin2.
• Added logging for GraphBin2.
• Provided support scripts to format the initial binning result.
• Added functionality to specify the delimiter.
• Fixed naming issue with SPAdes contigs.

Full Changelog: v0.2...v1.0

Please report any issues and suggestions under GraphBin2 Issues.

GraphBin2 v0.2

• This is the second pre-release of GraphBin2.
• Added Conda environment for GraphBin2.
• Added progress bars for tasks.
• Contains minor code refactoring.
• This release may contain bugs and unhandled errors.

Full Changelog: v0.1...v0.2

Please report any issues and suggestions under GraphBin2 Issues.

GraphBin2 v0.1

• This is the first pre-release of GraphBin2.
• This release may contain bugs and unhandled errors.
• Please report any issues and suggestions under GraphBin2 Issues.