Merge pull request #76 from belowlab/fix-packaging

Fix setup.py packaging, making bigscape installable

__main__.py

@@ -0,0 +1,8 @@
+import sys
+from . import bigscape
+
+def main():
+    bigscape.main()
+
+if __name__ == "__main__":
+    main()

bigscape.py

@@ -2072,8 +2072,7 @@ def CMD_parser():
 
     return parser.parse_args()
 
-
-if __name__=="__main__":
+def main():
     options = CMD_parser()
 
     class bgc_data:
@@ -3344,4 +3343,6 @@ def __init__(self, accession_id, description, product, records, max_width, bgc_s
     with open(os.path.join(log_folder, "runtimes.txt"), 'a') as timings_file:
         timings_file.write(runtime_string + "\n")
     print(runtime_string)
-
+
+if __name__=="__main__":
+    main()

setup.py

@@ -12,17 +12,19 @@ def generate_package_data():
     data_files.append('anchor_domains.txt')
     data_files.append('domain_includelist.txt')
     data_files.append('domains_color_file.tsv')
-    package_data={'BiG-SCAPE': data_files}
+    package_data={'bigscape': data_files}
     return package_data
 
 setup(
-     name='BiG-SCAPE',
-     version='1.1.4',
+     name='bigscape',
+     version='1.1.5',
      py_modules=['functions','ArrowerSVG'],
-     packages=['BiG-SCAPE'],
-     package_dir={'BiG-SCAPE': '.'},
+     packages=['bigscape'],
+     package_dir={'bigscape': '.'},
      package_data=generate_package_data(),
-     scripts=['bigscape.py'],
+     entry_points={
+         'console_scripts': ['bigscape=bigscape.__main__:main']
+     },
      description='Biosynthetic Genes Similarity Clustering and Prospecting Engine.',
      keywords=['secondary metabolites', 'natural products', 'genome mining'],
      url='https://github.com/medema-group/BiG-SCAPE',