Fixed rendering depth option.

build/brainbrowser-1.3.7/workers/data.worker.js → build/brainbrowser-1.3.8/workers/data.worker.js

@@ -16,7 +16,7 @@
  */
 
 /*
-* BrainBrowser v1.3.7
+* BrainBrowser v1.3.8
 * https://brainbrowser.cbrain.mcgill.ca/
 *
 * Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)

build/brainbrowser-1.3.7/workers/freesurfer_asc.worker.js → build/brainbrowser-1.3.8/workers/freesurfer_asc.worker.js

@@ -16,7 +16,7 @@
  */
 
 /*
-* BrainBrowser v1.3.7
+* BrainBrowser v1.3.8
 * https://brainbrowser.cbrain.mcgill.ca/
 *
 * Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)

build/brainbrowser-1.3.7/workers/wavefront_obj.worker.js → build/brainbrowser-1.3.8/workers/wavefront_obj.worker.js

@@ -16,7 +16,7 @@
  */
 
 /*
-* BrainBrowser v1.3.7
+* BrainBrowser v1.3.8
 * https://brainbrowser.cbrain.mcgill.ca/
 *
 * Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)

docs/docular/documentation/partials/brainbrowser/surface-viewer/viewer.loading:loadModelFromFile.html

@@ -13,6 +13,7 @@ <h2 id="Parameters">Parameters</h2>
 <ul>
 <li><strong>format</strong> The format of input file. Should be one of the filetypes described in
 BrainBrowser.config.</li>
+<li><strong>render_depth</strong> Force rendering at the given depth (can help with transparency).</li>
 <li><strong>parse</strong> Parsing options to pass to the worker that will be used to parse the
 input file.</li>
 <li><strong>before</strong> A callback to be called before loading starts.</li>

docs/docular/documentation/partials/brainbrowser/surface-viewer/viewer.loading:loadModelFromURL.html

@@ -13,6 +13,7 @@ <h2 id="Parameters">Parameters</h2>
 <ul>
 <li><strong>format</strong> The format of input file. Should be one of the filetypes described in
 BrainBrowser.config.</li>
+<li><strong>render_depth</strong> Force rendering at the given depth (can help with transparency).</li>
 <li><strong>parse</strong> Parsing options to pass to the worker that will be used to parse the
 input file.</li>
 <li><strong>before</strong> A callback to be called before loading starts.</li>

package.json

@@ -1,6 +1,6 @@
 {
   "name": "BrainBrowser",
-  "version": "1.3.7",
+  "version": "1.3.8",
   "private": true,
   "scripts": {
     "start": "node app.js"

public/development/js/brainbrowser/surface-viewer/modules/loading.js

@@ -37,6 +37,7 @@ BrainBrowser.SurfaceViewer.modules.loading = function(viewer) {
   *
   * * **format** The format of input file. Should be one of the filetypes described in
   *   BrainBrowser.config.
+  * * **render_depth** Force rendering at the given depth (can help with transparency).
   * * **parse** Parsing options to pass to the worker that will be used to parse the
   *   input file.
   * * **before** A callback to be called before loading starts.
@@ -57,6 +58,7 @@ BrainBrowser.SurfaceViewer.modules.loading = function(viewer) {
   *
   * * **format** The format of input file. Should be one of the filetypes described in
   *   BrainBrowser.config.
+  * * **render_depth** Force rendering at the given depth (can help with transparency).
   * * **parse** Parsing options to pass to the worker that will be used to parse the
   *   input file.
   * * **before** A callback to be called before loading starts.
@@ -431,18 +433,18 @@ BrainBrowser.SurfaceViewer.modules.loading = function(viewer) {
   // displays in on the viewer.
   function displayModel(model_data, filename, options) {
     options = options || {};
-    var renderDepth = options.renderDepth;
+    var render_depth = options.render_depth;
     var complete = options.complete;
 
-    addObject(model_data, filename, renderDepth);
+    addObject(model_data, filename, render_depth);
 
     viewer.triggerEvent("displaymodel", viewer.model);
 
     if (complete) complete();
   }
 
   // Add a polygon object to the scene.
-  function addObject(model_data, filename, renderDepth){
+  function addObject(model_data, filename, render_depth){
     var model = viewer.model;
     var shape, shape_data;
     var i, count;
@@ -464,8 +466,8 @@ BrainBrowser.SurfaceViewer.modules.loading = function(viewer) {
           colors: model_data.colors
         };
 
-        if (renderDepth) {
-          shape.renderDepth = renderDepth;
+        if (render_depth) {
+          shape.renderDepth = render_depth;
         }
         model.add(shape);
       }

public/development/js/brainbrowser/surface-viewer/modules/views.js

@@ -95,14 +95,17 @@ BrainBrowser.SurfaceViewer.modules.views = function(viewer) {
   viewer.setTransparency = function(shape_name, alpha) {
     var shape = viewer.model.getObjectByName(shape_name);
     var material, wireframe;
+
     if (shape) {
       material = shape.material;
       material.opacity = alpha;
+
       if (alpha === 1) {
         material.transparent = false;
       } else {
         material.transparent = true;
       }
+
       wireframe = shape.getObjectByName("__wireframe__");
       if (wireframe) {
         wireframe.material.opacity = material.opacity;