require numpy>1.26

[rkingsbury]

This seems necessary to prevent an unusual pandas error in open data (which surfaced in the Auto Dependency Upgrades workflow after allowing numpy>2

_________________________________ test_update __________________________________

self = Scope(scope=['Timestamp',
 'datetime',
 'True',
 'False',
 'list',
 'tuple',
 'inf',
 'Inf',
 '__name__',
 '__doc__',
..._index']
, resolvers=['ilevel_0',
 'index',
 'clevel_0',
 'columns',
 'last_updated',
 'task_id',
 'group_level_two']
)
key = 'np', is_local = False

    def resolve(self, key: str, is_local: bool):
        """
        Resolve a variable name in a possibly local context.
    
        Parameters
        ----------
        key : str
            A variable name
        is_local : bool
            Flag indicating whether the variable is local or not (prefixed with
            the '@' symbol)
    
        Returns
        -------
        value : object
            The value of a particular variable
        """
        try:
            # only look for locals in outer scope
            if is_local:
                return self.scope[key]
    
            # not a local variable so check in resolvers if we have them
            if self.has_resolvers:
>               return self.resolvers[key]

/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/scope.py:231: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/collections/__init__.py:1006: in __getitem__
    return self.__missing__(key)            # support subclasses that define __missing__
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = DeepChainMap({'last_updated': 0   2024-08-23 18:30:08.900661
1   2024-08-23 18:30:08.900663
Name: last_updated, dtype:...ast_updated          last_updated
task_id                    task_id
group_level_two    group_level_two
dtype: object})
key = 'np'

    def __missing__(self, key):
>       raise KeyError(key)
E       KeyError: 'np'

/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/collections/__init__.py:998: KeyError

During handling of the above exception, another exception occurred:

self = Scope(scope=['Timestamp',
 'datetime',
 'True',
 'False',
 'list',
 'tuple',
 'inf',
 'Inf',
 '__name__',
 '__doc__',
..._index']
, resolvers=['ilevel_0',
 'index',
 'clevel_0',
 'columns',
 'last_updated',
 'task_id',
 'group_level_two']
)
key = 'np', is_local = False

    def resolve(self, key: str, is_local: bool):
        """
        Resolve a variable name in a possibly local context.
    
        Parameters
        ----------
        key : str
            A variable name
        is_local : bool
            Flag indicating whether the variable is local or not (prefixed with
            the '@' symbol)
    
        Returns
        -------
        value : object
            The value of a particular variable
        """
        try:
            # only look for locals in outer scope
            if is_local:
                return self.scope[key]
    
            # not a local variable so check in resolvers if we have them
            if self.has_resolvers:
                return self.resolvers[key]
    
            # if we're here that means that we have no locals and we also have
            # no resolvers
            assert not is_local and not self.has_resolvers
            return self.scope[key]
        except KeyError:
            try:
                # last ditch effort we look in temporaries
                # these are created when parsing indexing expressions
                # e.g., df[df > 0]
>               return self.temps[key]
E               KeyError: 'np'

/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/scope.py:242: KeyError

The above exception was the direct cause of the following exception:

s3store = <maggma.stores.open_data.OpenDataStore object at 0x7f18dfb08150>

    def test_update(s3store):
        assert len(s3store.index_data) == 2
>       s3store.update(
            pd.DataFrame(
                [
                    {
                        "task_id": "mp-199999",
                        "data": "asd",
                        "group": {"level_two": 4},
                        s3store.last_updated_field: datetime.utcnow(),
                    }
                ]
            )
        )

tests/stores/test_open_data.py:395: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
src/maggma/stores/open_data.py:531: in update
    sub_existing = existing_index.query(query_str)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/frame.py:4823: in query
    res = self.eval(expr, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/frame.py:4949: in eval
    return _eval(expr, inplace=inplace, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/eval.py:336: in eval
    parsed_expr = Expr(expr, engine=engine, parser=parser, env=env)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:809: in __init__
    self.terms = self.parse()
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:828: in parse
    return self._visitor.visit(self.expr)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:412: in visit
    return visitor(node, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:418: in visit_Module
    return self.visit(expr, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:412: in visit
    return visitor(node, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:421: in visit_Expr
    return self.visit(node.value, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:412: in visit
    return visitor(node, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:746: in visit_BoolOp
    return reduce(visitor, operands)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:739: in visitor
    lhs = self._try_visit_binop(x)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:735: in _try_visit_binop
    return self.visit(bop)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:412: in visit
    return visitor(node, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:719: in visit_Compare
    return self.visit(binop)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:412: in visit
    return visitor(node, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:532: in visit_BinOp
    op, op_class, left, right = self._maybe_transform_eq_ne(node)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:454: in _maybe_transform_eq_ne
    right = self.visit(node.right, side="right")
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:412: in visit
    return visitor(node, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:659: in visit_Call
    res = self.visit_Attribute(node.func)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:644: in visit_Attribute
    resolved = self.visit(value).value
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:412: in visit
    return visitor(node, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/expr.py:545: in visit_Name
    return self.term_type(node.id, self.env, **kwargs)
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/ops.py:91: in __init__
    self._value = self._resolve_name()
/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/ops.py:115: in _resolve_name
    res = self.env.resolve(local_name, is_local=is_local)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Scope(scope=['Timestamp',
 'datetime',
 'True',
 'False',
 'list',
 'tuple',
 'inf',
 'Inf',
 '__name__',
 '__doc__',
..._index']
, resolvers=['ilevel_0',
 'index',
 'clevel_0',
 'columns',
 'last_updated',
 'task_id',
 'group_level_two']
)
key = 'np', is_local = False

    def resolve(self, key: str, is_local: bool):
        """
        Resolve a variable name in a possibly local context.
    
        Parameters
        ----------
        key : str
            A variable name
        is_local : bool
            Flag indicating whether the variable is local or not (prefixed with
            the '@' symbol)
    
        Returns
        -------
        value : object
            The value of a particular variable
        """
        try:
            # only look for locals in outer scope
            if is_local:
                return self.scope[key]
    
            # not a local variable so check in resolvers if we have them
            if self.has_resolvers:
                return self.resolvers[key]
    
            # if we're here that means that we have no locals and we also have
            # no resolvers
            assert not is_local and not self.has_resolvers
            return self.scope[key]
        except KeyError:
            try:
                # last ditch effort we look in temporaries
                # these are created when parsing indexing expressions
                # e.g., df[df > 0]
                return self.temps[key]
            except KeyError as err:
>               raise UndefinedVariableError(key, is_local) from err
E               pandas.errors.UndefinedVariableError: name 'np' is not defined

/opt/hostedtoolcache/Python/3.11.9/x64/lib/python3.11/site-packages/pandas/core/computation/scope.py:244: UndefinedVariableError

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 88.83%. Comparing base (10689d6) to head (9f924ee).
Report is 3 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #994   +/-   ##
=======================================
  Coverage   88.83%   88.83%           
=======================================
  Files          46       46           
  Lines        3985     3985           
=======================================
  Hits         3540     3540           
  Misses        445      445           

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