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update Dockerfile
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Martin Schorb committed Feb 7, 2024
1 parent 65c9f10 commit 0fc463c
Showing 1 changed file with 6 additions and 5 deletions.
11 changes: 6 additions & 5 deletions Dockerfile
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# syntax=docker/dockerfile:1
FROM continuumio/miniconda3
FROM mambaorg/micromamba
RUN useradd testuser &&\
mkdir /home/testuser &&\
chown -R testuser:testuser /opt/conda &&\
chown -R testuser:testuser /home/testuser
USER testuser
RUN conda install python=3.7 -y &&\
conda install git mobie_utils -c conda-forge -y &&\
RUN mamba install python=3.7 -y &&\
mamba install git mobie_utils -c conda-forge -y &&\
pip install render-python &&\
pip install git+https://github.com/AllenInstitute/asap-modules/ --no-deps &&\
pip install git+https://github.com/AllenInstitute/asap-modules/ &&\
pip install git+https://git.embl.de/schorb/pyem &&\
pip install git+https://github.com/mobie/mobie-utils-python --no-deps
pip install git+https://github.com/mobie/mobie-utils-python --no-deps &&\
pip install -r test_requirements.txt
USER root
CMD ["/bin/bash"]

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