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Martin Schorb
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Feb 7, 2024
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# syntax=docker/dockerfile:1 | ||
FROM continuumio/miniconda3 | ||
FROM mambaorg/micromamba | ||
RUN useradd testuser &&\ | ||
mkdir /home/testuser &&\ | ||
chown -R testuser:testuser /opt/conda &&\ | ||
chown -R testuser:testuser /home/testuser | ||
USER testuser | ||
RUN conda install python=3.7 -y &&\ | ||
conda install git mobie_utils -c conda-forge -y &&\ | ||
RUN mamba install python=3.7 -y &&\ | ||
mamba install git mobie_utils -c conda-forge -y &&\ | ||
pip install render-python &&\ | ||
pip install git+https://github.com/AllenInstitute/asap-modules/ --no-deps &&\ | ||
pip install git+https://github.com/AllenInstitute/asap-modules/ &&\ | ||
pip install git+https://git.embl.de/schorb/pyem &&\ | ||
pip install git+https://github.com/mobie/mobie-utils-python --no-deps | ||
pip install git+https://github.com/mobie/mobie-utils-python --no-deps &&\ | ||
pip install -r test_requirements.txt | ||
USER root | ||
CMD ["/bin/bash"] | ||
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