Remove msmtools

[clonker]

replaces calls to msmtools with calls to deeptime

[codecov]

Codecov Report

Merging #1555 (de97208) into devel (6d1f334) will increase coverage by 1.57%.
The diff coverage is 96.54%.

@@            Coverage Diff             @@
##            devel    #1555      +/-   ##
==========================================
+ Coverage   90.37%   91.94%   +1.57%     
==========================================
  Files         229      229              
  Lines       26912    26629     -283     
==========================================
+ Hits        24321    24485     +164     
+ Misses       2591     2144     -447     

Impacted Files	Coverage Δ
pyemma/coordinates/tests/test_traj_info_cache.py	93.75% <ø> (+74.71%)	⬆️
pyemma/coordinates/clustering/interface.py	88.09% <62.50%> (-1.17%)	⬇️
pyemma/datasets/double_well_discrete.py	86.04% <66.66%> (+4.65%)	⬆️
pyemma/msm/estimators/maximum_likelihood_msm.py	91.66% <71.42%> (ø)
pyemma/msm/estimators/maximum_likelihood_hmsm.py	88.88% <83.33%> (+0.27%)	⬆️
pyemma/thermo/extensions/cset.py	64.91% <83.33%> (ø)
pyemma/msm/models/pcca.py	91.30% <90.00%> (-1.92%)	⬇️
pyemma/msm/estimators/_dtraj_stats.py	79.48% <90.90%> (-4.54%)	⬇️
pyemma/_base/serialization/serialization.py	81.20% <100.00%> (+0.43%)	⬆️
pyemma/coordinates/tests/test_pca.py	99.37% <100.00%> (ø)
... and 52 more

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