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marjanUofT/README.md

Hi, I’m Marjan 👋

MASc (UofT) – Chemical Engineering | Protein Engineering & Machine Learning | ex-Software Engineer
AI, Computational Biology

Current work

  • Iterative sequence design loop with simulated annealing (avGFP).
  • ESM-1b embeddings + t-SNE visualization across datasets.
  • JackHMMER searches and dataset curation.
  • GFP function predictor with calibrated [0,1] outputs.

Links

Tech I use

Python PyTorch Java

Pinned Loading

  1. Low-N_predictions Low-N_predictions Public

    Simulated Annealing through Markov Chain Monte Carlo(MCMC) in Low-N

  2. microsoft/evodiff microsoft/evodiff Public

    Generation of protein sequences and evolutionary alignments via discrete diffusion models

    Python 663 110

  3. gfp-predictor gfp-predictor Public

    Jupyter Notebook

  4. evodiff_inpainting evodiff_inpainting Public

    Jupyter Notebook 1

  5. mcmc-seq-gen mcmc-seq-gen Public

    Jupyter Notebook 1