input change

mapo9 · Mar 25, 2024 · 6639f0f · 6639f0f
1 parent 11c4195
commit 6639f0f
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Showing 2 changed files with 1 addition and 6 deletions.
diff --git a/subworkflows/local/fastq_input_check.nf b/subworkflows/local/fastq_input_check.nf
@@ -99,8 +99,6 @@ def create_fastq_channels(LinkedHashMap col) {
         }
         else if (params.umi_position == "") {
             meta.umi_position = null 
-        } else {
-            error "ERROR: UMI read must be specified as either R1 or R2!"
         }
         array = [ meta, [ file(col.filename_R1), file(col.filename_R2) ] ]
     } else {

diff --git a/subworkflows/local/rnaseq_input.nf b/subworkflows/local/rnaseq_input.nf
@@ -23,7 +23,7 @@ workflow RNASEQ_INPUT {
 
     ch_reads = FASTQ_INPUT_CHECK.out.reads
 
-    // validate library generation method parameter
+    // validate library generation method parameteç
     if (params.vprimers) {
         error "The TRUST4 library generation method does not require V-region primers, please provide a reference file instead or select another library method option."
     } else if (params.race_linker) {
@@ -42,9 +42,6 @@ workflow RNASEQ_INPUT {
     if (!params.coord_fasta) {
         error "Please provide a reference file for the TRUST4 library generation method."
     }
-    if (!params.read_format) {
-        error "Please provide a a read-format as seen in the TRUST4 docs for the TRUST4 library generation method."
-    }
 
 
     ch_reads.map{ meta, input_file  ->