Merge pull request nf-core#287 from ggabernet/dev

Remove FilterQuality silent fail

CHANGELOG.md

@@ -3,6 +3,16 @@
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
+## [3.2.1dev] -
+
+### `Added`
+
+### `Fixed`
+
+- Removed optional output from FilterQuality to not fail silently
+
+### `Dependencies`
+
 ## [3.2.0] - 2023-10-27 Expecto patronum
 
 ### `Added`

assets/multiqc_config.yml

@@ -1,5 +1,5 @@
 report_comment:
-  This report has been generated by the <a href="https://nf-co.re/airrflow/3.2.0" target="_blank">nf-core/airrflow</a>
+  This report has been generated by the <a href="https://nf-co.re/airrflow/3.2.1dev" target="_blank">nf-core/airrflow</a>
   analysis pipeline. For information about how to interpret these results, please see the
   <a href="https://nf-co.re/airrflow" target="_blank">documentation</a>.
 

modules/local/reveal/filter_quality.nf

@@ -14,7 +14,7 @@ process FILTER_QUALITY {
     tuple val(meta), path(tab) // sequence tsv in AIRR format
 
     output:
-    tuple val(meta), path("*quality-pass.tsv"), optional:true, emit: tab // sequence tsv in AIRR format
+    tuple val(meta), path("*quality-pass.tsv"), emit: tab // sequence tsv in AIRR format
     path("*_command_log.txt"), emit: logs //process logs
     path "versions.yml", emit: versions
 

nextflow.config

@@ -329,7 +329,7 @@ manifest {
     description     = """B and T cell repertoire analysis pipeline with the Immcantation framework."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '3.2.0'
+    version = '3.2.1dev'
     doi             = '10.5281/zenodo.2642009'
 }