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Release 1.1.0#339

Merged
magicDGS merged 7 commits intomasterfrom
release_1.1.0
Oct 4, 2017
Merged

Release 1.1.0#339
magicDGS merged 7 commits intomasterfrom
release_1.1.0

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@magicDGS magicDGS commented Oct 4, 2017

Includes updates for CHANGELOG
Closes #325

@magicDGS magicDGS added this to the Version 1.1.0 milestone Oct 4, 2017
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codecov bot commented Oct 4, 2017

Codecov Report

Merging #339 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##              master      #339   +/-   ##
===========================================
  Coverage     92.403%   92.403%           
  Complexity       791       791           
===========================================
  Files             79        79           
  Lines           2251      2251           
  Branches         248       248           
===========================================
  Hits            2080      2080           
  Misses           132       132           
  Partials          39        39

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FAQ issues

id: One
question: "AssignReadGroupByBarcode 'UNEXPECTED ERROR: 1'"
answer: 'This error is found in version 1.0.0 when a barcode file with more than one barcode
answer: '<i><b>This error is solved in versions > 1.0.0</b></i></p>
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Missing <p>at the beginning

<code>java -Dsnappy.disable=true -jar ReadTools.jar</code>.
<p>This is a known bug of one of the libraries used in ReadTools that may be solved
in the future.</p>'
answer: '<i><b>This error is solved in versions > 1.0.0</b></i></p>
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Missing <p> at the beginning

echo "[$(date)] WARNING: download URLs including version ${n} will be ignored (release branch)";
## in case of the release branch, ignore the
url_ignore="--url-ignore https://github.com/magicDGS/ReadTools/archive/${n}.tar.gz,https://github.com/magicDGS/ReadTools/releases/download/${n}/ReadTools.jar"
echo "DEBUG: $url_ignore"
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Remove DEBUG code

@magicDGS magicDGS merged commit fe4873b into master Oct 4, 2017
@magicDGS magicDGS deleted the release_1.1.0 branch October 4, 2017 16:00
@codecov
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codecov bot commented Oct 4, 2017

Codecov Report

Merging #339 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##              master      #339   +/-   ##
===========================================
  Coverage     92.403%   92.403%           
  Complexity       791       791           
===========================================
  Files             79        79           
  Lines           2251      2251           
  Branches         248       248           
===========================================
  Hits            2080      2080           
  Misses           132       132           
  Partials          39        39

@codecov
Copy link

codecov bot commented Oct 4, 2017

Codecov Report

Merging #339 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##              master      #339   +/-   ##
===========================================
  Coverage     92.403%   92.403%           
  Complexity       791       791           
===========================================
  Files             79        79           
  Lines           2251      2251           
  Branches         248       248           
===========================================
  Hits            2080      2080           
  Misses           132       132           
  Partials          39        39

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