Covid Antibody Visualisation

Publication

This code was used for: Kreye, Jakob, et al. "A therapeutic non-self-reactive SARS-CoV-2 antibody protects from lung pathology in a COVID-19 hamster model." Cell (2020). https://doi.org/10.1016/j.cell.2020.09.049 (Figure S3B)

Project structure

• circos.html output (includes code)
• circos.Rmd main script & doc (produces circos.html)
• covid_raw.R equivalent to circos.Rmd but straight up R code (without markdown)
• covid_antibody.RProj open this file to edit the scripts in RStudio
• ./r/.*.R functions used in circos.Rmd
• ./data raw data as received. Do not edit these files. (may be exluded from repository - please ask for data)
• ./resources related information / documents

Citation

Please cite the circlize package authors as:

@Article{,
   title = {circlize implements and enhances circular visualization in R},
   author = {Zuguang Gu and Lei Gu and Roland Eils and Matthias Schlesner and Benedikt Brors},
   journal = {Bioinformatics},
   volume = {30},
   issue = {19},
   pages = {2811-2812},
   year = {2014},
 }

(more info on citing R packages: https://www.r-bloggers.com/how-to-cite-packages/ )