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  1. ND2_imaging_pipeline ND2_imaging_pipeline Public

    Import Nikon ND2 image files, extract metadata, register images, choose ROIs, and quantify fluorescence/FRET

    MATLAB 1

  2. SRA_Tinder SRA_Tinder Public

    Forked from NCBI-Hackathons/SRA_Tinder

    Find hot data sets in your area (of research)!

    Jupyter Notebook

  3. RNASeq_processing_scripts RNASeq_processing_scripts Public

    All script files that I accumulated from my CU Boulder RNA-Seq analysis

    Shell

  4. general_processing_notebooks general_processing_notebooks Public

    Mostly unrelated Jupyter notebooks for processing different aspects of seq and genome data

    Jupyter Notebook

  5. DE_gene_scan DE_gene_scan Public

    Pipeline to scan for differentially expressed genes around specific genomic coordinates

    Python

  6. sanford_shortread sanford_shortread Public