Benchmark repo for argNorm

Woltka: a versatile meta'omic data classifier

🆔 Scan contig files against PubMLST typing schemes

Animation engine for explanatory math videos

Logan Unitigs and Contigs

Bioinformatic Tools for study Evolution of metabolic diversity

Taxonomy manipulation for sylph (new version)

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

Obsidian 🤝 Neovim

Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs

Synteny and Rearrangement Identifier

A course on aligning smol models.

A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

a long read simulator that can imitate many types of read problems

Remove human reads from a sequencing run

Precise host read removal. Friendly to microbes, hostile towards host

Fast and accurate de novo assembler for long reads

⚡ A Fast, Extensible Progress Bar for Python and CLI

CAMISIM: Simulating metagenomes and microbial communities

Robs manual for the computational genomics and bioinformatics class.

Command line utility for manipulating Illumina-generated FASTQ files.

😎 Awesome lists about all kinds of interesting topics

A frictionless, pipeable approach to dealing with summary statistics

A hybrid assembly and MAG recovery pipeline (and more!)

the pangenome graph builder

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

A handy calculator, based on Rust and WebAssembly.

Easy Amplicon data analysis pipeline

Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"