[neophile] Update dependencies

- Update pre-commit/pre-commit-hooks pre-commit hook from v3.2.0 to v3.4.0
- Update PyCQA/isort pre-commit hook from 5.5.4 to 5.8.0
- Update pycqa/flake8 pre-commit hook from 3.8.4 to 3.9.0

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.2.0
+    rev: v3.4.0
     hooks:
       - id: trailing-whitespace
       - id: check-yaml
@@ -9,7 +9,7 @@ repos:
       - id: check-json
 
   - repo: https://github.com/PyCQA/isort
-    rev: 5.5.4
+    rev: 5.8.0
     hooks:
       - id: isort
         additional_dependencies:
@@ -21,6 +21,6 @@ repos:
       - id: black
 
   - repo: https://gitlab.com/pycqa/flake8
-    rev: 3.8.4
+    rev: 3.9.0
     hooks:
       - id: flake8