Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2

Scripts used for correcting RFPA drift

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

niimath - a clone of fslmaths. Try the live demo:

Toolbox for generating spatially uniform sampling patterns and decompositions of a unit sphere

DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).

ITK-SNAP medical image segmentation tool

Pre-trained models and utilities for deep learning on medical images in Python

Advanced Normalization Tools (ANTs)

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

A toolkit to generate MR sequence diagrams

Quantitative MRI toolbox in Python

Landing page for BART Webinars

A medical image converter

Code to simulate mcDESPOT parameter estimation and investigate search-space degeneracy. Key scripts: search-space sampling is performed using "mcDESPOT_SP.m" and Monte Carlo simulations are perform…

Matlab toolbox to reconstruct and process MRI data

Computation of AZTEK trajectories for 3D radial UTE MR acquistions

Compiled sequence and reconstruction of the MP2RAGE + CS sequence for Bruker scanner

Open source software for medical image processing from the Empenn team

Gradient Unwarping in Python

MRI simulation toolkit

Very fast greedy diffeomorphic registration code

Multi Exponential Relaxation Analysis toolbox for MATLAB

Extended Phase Graphs for systems with Magnetization Transfer and Chemical Exchange

Convert between Linux and Windows path in WSL