SNOMED namespacing

[joeflack4]

Overview

We are temporarily using loinc as the prefix for SNOMED terms. We need to add a SNOMED prefix to the LinkML data model, then regenerate the Python data classes.

Example

Just a snippet of the outputs snomed-parts.owl:

    AnnotationAssertion( rdfs:label loinc:138875005 "SCT   SNOMED CT Concept (SNOMED RT+CTV3)" )
    SubClassOf( loinc:362981000 loinc:138875005 )

Most or all classes (I can't remember which; Shahim would know) in this file should have a SNOMED prefix, not loinc.

Verification

Afterwards, if we run the build, we should see that loinc-snomed-equiv.owl is now using this prefix instead for SNOMED terms.

[joeflack4]

Assigned to Shahim, but Madan or I could also do this.

[joeflack4]

• @ShahimEssaid Did you address this in Se/py horned owl next #208? If so, can be closed.

[joeflack4]

@ShahimEssaid I believe you fixed this, although this issue still remains:

• Bug: Unknown prefixes && Inconsistent SNOMED URI prefixes #261