Install zstd in silo-preprocessing docker image in kubernetes config

* check if zstd can be installed after container set up.
loculus-project · Sep 13, 2024 · bc59479 · bc59479
1 parent 06f877a
commit bc59479
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diff --git a/kubernetes/loculus/templates/lapis-silo-deployment.yaml b/kubernetes/loculus/templates/lapis-silo-deployment.yaml
@@ -88,7 +88,9 @@ spec:
               memory: "20Mi"
           command:
             - sh
-            - /silo_import_wrapper.sh
+            - -c
+            - |
+              apt-get update && apt-get install -y zstd && sh /silo_import_wrapper.sh
           env:
             - name: BACKEND_BASE_URL
               {{- if $.Values.disableBackend }}

diff --git a/kubernetes/loculus/values.yaml b/kubernetes/loculus/values.yaml
@@ -1406,7 +1406,7 @@ insecureCookies: false
 bannerMessage: "This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly."
 additionalHeadHTML: '<script defer data-domain="loculus.org" src="https://plausible.io/js/script.js"></script>'
 images:
-  lapisSilo: "ghcr.io/genspectrum/lapis-silo:commit-f7b38154eb93106f2d9a6b9c97e34492248e1500"
+  lapisSilo: "ghcr.io/genspectrum/lapis-silo:0.2.17"
   lapis: "ghcr.io/genspectrum/lapis:0.3.1"
 secrets:
   smtp-password: