GitHub - lmgoncalves94/InterNLR: InterNLR is a tool to rapidly identify NLR and NLR-like proteins from a protein file based on the presence and order of specific domains.

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InterNLR is a tool to rapidly identify NLR and NLR-like proteins from a protein file based on the presence and order of specific domains.

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README.txt		README.txt
domain_caller.py		domain_caller.py
internlr		internlr
nlr_caller.py		nlr_caller.py

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InterNLR v1.0 
Created by Luís Miguel Gonçalves

Description
-----------

InterNLR is a tool to rapidly identify NLR and NLR-like proteins from a protein file based on the presence and order of specific domains.



Requirements
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Python3

Interproscan 5.51-85.0



Installation
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1. Copy the content to a desired directory

2. Add the following lines to the end of .bashrc: 

export IPS_PATH=/path/to/interproscan-5.51-85.0/
export INTERNLR_PATH=/path/to/internlr/
export PATH=$PATH:/path/to/internlr/

3. Restart the Linux session



Usage
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internlr /path/to/input/protein.fasta /path/to/output/directory