update check_all_models.py to enable selecting a specific model #35
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| name: build for python 3.10 on CPU | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| name: build | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| defaults: | |
| run: | |
| shell: bash -el {0} # required otherwise conda will not be activated for "run" steps | |
| env: | |
| W_ENV_NAME: buildenv | |
| W_REQ_CONDA: .github/workflow-env-py310-cpu.yml | |
| W_REQ_PIP: requirements.txt | |
| W_CACHE_NUMBER: 0 # increase to reset cache | |
| SEGMENT_DOWNLOAD_TIMEOUT_MINS: 2 # stuck cache download should stop after X minutes | |
| W_CACHE_KILL: 3 # hard kill a stuck cache download after X minutes | |
| steps: | |
| # | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| # | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: ${{ env.W_ENV_NAME }} | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| # | |
| - name: Collect information | |
| id: collect-info | |
| run: | | |
| conda info | |
| echo "----------" | |
| _now=$(date -u '+%s') | |
| echo "today=$(date -u '+%Y%m%d' -d @${_now})" >> $GITHUB_OUTPUT | |
| echo "thisweek=$(date -u '+%V' -d @${_now})" >> $GITHUB_OUTPUT | |
| echo "env_conda=$CONDA" >> $GITHUB_OUTPUT | |
| mkdir -p /tmp/dummydir1 | |
| echo "pipdummy written to tempdir" > /tmp/dummydir1/pipdummy.txt | |
| cat /tmp/dummydir1/pipdummy.txt | |
| echo "----------" | |
| echo "saved output:" | |
| cat $GITHUB_OUTPUT | |
| # | |
| - name: Check if pip should update | |
| uses: actions/cache/restore@v4 | |
| timeout-minutes: 1 | |
| continue-on-error: true | |
| with: | |
| path: /tmp/dummydir1 | |
| key: pipupdate-${{ runner.os }}--${{ runner.arch }}--${{ env.W_ENV_NAME }}--date-${{ | |
| steps.collect-info.outputs.today }}-conda-${{ | |
| hashFiles(env.W_REQ_CONDA) }}-pip-${{ | |
| hashFiles(env.W_REQ_PIP)}}-cachenum-${{ | |
| env.W_CACHE_NUMBER }} | |
| id: cache-pipdummy-restore | |
| # | |
| - name: Save that pip will update | |
| uses: actions/cache/save@v4 | |
| timeout-minutes: 1 | |
| continue-on-error: true | |
| with: | |
| path: /tmp/dummydir1 | |
| key: ${{ steps.cache-pipdummy-restore.outputs.cache-primary-key }} | |
| id: cache-pipdummy-save | |
| if: steps.cache-pipdummy-restore.outputs.cache-hit != 'true' | |
| # | |
| - name: Restore cache for conda env # cannot see $CONDA here so use output from previous step | |
| uses: actions/cache/restore@v4 | |
| timeout-minutes: ${{ fromJSON(env.W_CACHE_KILL) }} # fromJSON is required to convert to int | |
| continue-on-error: true | |
| with: | |
| path: ${{ steps.collect-info.outputs.env_conda }}/envs/${{ env.W_ENV_NAME }} | |
| key: conda-${{ runner.os }}--${{ runner.arch }}--${{ env.W_ENV_NAME }}--calweek-${{ | |
| steps.collect-info.outputs.thisweek }}--conda-${{ | |
| hashFiles(env.W_REQ_CONDA) }}--cachenum-${{ | |
| env.W_CACHE_NUMBER }}--commit-${{ github.sha }} | |
| restore-keys: conda-${{ runner.os }}--${{ runner.arch }}--${{ env.W_ENV_NAME }}--calweek-${{ | |
| steps.collect-info.outputs.thisweek }}--conda-${{ | |
| hashFiles(env.W_REQ_CONDA) }}--cachenum-${{ | |
| env.W_CACHE_NUMBER }} | |
| id: cache-conda-restore | |
| # | |
| - name: Conda install packages | |
| run: | | |
| mamba env update -q -n ${{ env.W_ENV_NAME }} -f ${{ env.W_REQ_CONDA }} | |
| if: steps.cache-conda-restore.outputs.cache-matched-key == '' | |
| id: conda-install | |
| # | |
| - name: Pip install packages | |
| run: | | |
| python -m pip install --progress-bar off -U pip | |
| pip install --progress-bar off -U -r ${{ env.W_REQ_PIP }} | |
| pip install --progress-bar off -U pytest pytest-cov pylint | |
| if: | | |
| steps.cache-conda-restore.outputs.cache-matched-key == '' || | |
| steps.cache-pipdummy-restore.outputs.cache-hit != 'true' | |
| id: pip-install | |
| # | |
| - name: Conda list | |
| run: conda list | |
| # | |
| - name: Pip list | |
| run: pip list | |
| # | |
| - name: Save cache for conda env | |
| uses: actions/cache/save@v4 | |
| timeout-minutes: ${{ fromJSON(env.W_CACHE_KILL) }} # fromJSON is required to convert to int | |
| continue-on-error: true | |
| with: | |
| path: ${{ steps.collect-info.outputs.env_conda }}/envs/${{ env.W_ENV_NAME }} | |
| key: ${{ steps.cache-conda-restore.outputs.cache-primary-key }} | |
| id: cache-conda-save | |
| if: | | |
| steps.cache-conda-restore.outputs.cache-matched-key == '' || | |
| steps.cache-pipdummy-restore.outputs.cache-hit != 'true' | |
| # | |
| - name: Install code | |
| run: | | |
| python -m pip install -U -e . | |
| # | |
| - name: Run pytest | |
| run: | | |
| python -m pytest tests --cov | |
| # | |
| - name: Run pylint | |
| continue-on-error: true | |
| run: | | |
| pylint ovqa | |
| pylint tests | |
| # |