Covsirphy 3.1.0

Covsirphy dropped Python version 3.8 and added Python 3.12 support.
Covsirphy version 3.1.0 support 3.9, 3.10, 3.11 and 3.12.

Milestone:
https://github.com/lisphilar/covid19-sir/milestone/53?closed=1

Related issues

• [New] Drop Python 3.8 support #1591
• [New] Add Python 3.12 support #1592
• [Bug] UserWarning when plotting: The figure layout has changed to tight #1484
• [Bug] FutureWarning with the behavior of DataFrame concatenation with empty or all-NA entries #1511
• [Bug] FutureWarning: The default of observed=False is deprecated #1514
• [Bug] FutureWarning: Series.getitem treating keys as positions is deprecated #1513
• [Bug] FutureWarning: Setting an item of incompatible dtype is deprecated #1515
• [Bug] FutureWarning: Series.getitem treating keys as positions is deprecated #1595
• [Bug] FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value ' #1594
• [Bug] DeprecationWarning: DataFrameGroupBy.apply operated on the grouping columns #1596
• [Bug] tests failed with covsirphy.util.error.NotIncludedError: 'Population' was not included in the 'column list of raw data'. The dataframe has ISO3, Province, City, Date as columns. #1597
• [Docs] fix URL expiration regarding pepy.tech #1504
• [Docs] show data flow diagram of CovsirPhy on README #1507

What's Changed

• Bump ipykernel from 6.23.0 to 6.23.1 by @dependabot in #1442
• Bump pyright from 1.1.308 to 1.1.309 by @dependabot in #1443
• Bump requests from 2.30.0 to 2.31.0 by @dependabot in #1444
• Bump autots from 0.5.6 to 0.5.7 by @dependabot in #1445
• Bump typing-extensions from 4.5.0 to 4.6.0 by @dependabot in #1447
• Bump sphinx-rtd-theme from 1.2.0 to 1.2.1 by @dependabot in #1446
• Bump typing-extensions from 4.6.0 to 4.6.1 by @dependabot in #1448
• Bump pytest-cov from 4.0.0 to 4.1.0 by @dependabot in #1449
• Bump tornado from 6.3.1 to 6.3.2 by @dependabot in #1450
• Bump nbsphinx from 0.9.1 to 0.9.2 by @dependabot in #1451
• Bump typing-extensions from 4.6.1 to 4.6.2 by @dependabot in #1452
• Bump pyright from 1.1.309 to 1.1.310 by @dependabot in #1453
• Bump pandas from 2.0.1 to 2.0.2 by @dependabot in #1454
• Bump pca from 2.0.1 to 2.0.2 by @dependabot in #1455
• Bump optuna from 3.1.1 to 3.2.0 by @dependabot in #1456
• Bump pyright from 1.1.310 to 1.1.311 by @dependabot in #1458
• Bump pca from 2.0.2 to 2.0.3 by @dependabot in #1457
• Bump typing-extensions from 4.6.2 to 4.6.3 by @dependabot in #1459
• Bump geopandas from 0.13.0 to 0.13.1 by @dependabot in #1460
• Bump geopandas from 0.13.1 to 0.13.2 by @dependabot in #1461
• Bump ruptures from 1.1.7 to 1.1.8 by @dependabot in #1462
• Bump sphinx-rtd-theme from 1.2.1 to 1.2.2 by @dependabot in #1463
• Bump pyright from 1.1.311 to 1.1.313 by @dependabot in #1464
• Bump pytest from 7.3.1 to 7.3.2 by @dependabot in #1465
• Bump ipykernel from 6.23.1 to 6.23.2 by @dependabot in #1466
• Bump pyarrow from 12.0.0 to 12.0.1 by @dependabot in #1467
• Bump pyright from 1.1.313 to 1.1.314 by @dependabot in #1468
• Bump deptry from 0.11.0 to 0.12.0 by @dependabot in #1469
• Bump pyright from 1.1.314 to 1.1.315 by @dependabot in #1470
• Bump pytest from 7.3.2 to 7.4.0 by @dependabot in #1471
• Bump ipykernel from 6.23.2 to 6.23.3 by @dependabot in #1472
• Bump numpy from 1.24.3 to 1.24.4 by @dependabot in #1473
• Bump pyright from 1.1.315 to 1.1.316 by @dependabot in #1474
• Bump typing-extensions from 4.6.3 to 4.7.0 by @dependabot in #1476
• Bump pandas from 2.0.2 to 2.0.3 by @dependabot in #1475
• Bump typing-extensions from 4.7.0 to 4.7.1 by @dependabot in #1479
• Bump pillow from 9.5.0 to 10.0.0 by @dependabot in #1478
• Bump ipykernel from 6.23.3 to 6.24.0 by @dependabot in #1477
• Bump ipywidgets from 8.0.6 to 8.0.7 by @dependabot in #1480
• use fig.set_tight_layout(True) instead of plt.tight_layout() by @lisphilar in #1485
• Bump pyright from 1.1.316 to 1.1.317 by @dependabot in #1483
• Bump autots from 0.5.7 to 0.5.8 by @dependabot in #1482
• Bump matplotlib from 3.7.1 to 3.7.2 by @dependabot in #1481
• Bump pyright from 1.1.317 to 1.1.318 by @dependabot in #1487
• Bump ipykernel from 6.24.0 to 6.25.0 by @dependabot in #1488
• Bump ipywidgets from 8.0.7 to 8.1.0 by @dependabot in #1489
• Bump pyright from 1.1.318 to 1.1.320 by @dependabot in #1490
• Bump pca from 2.0.3 to 2.0.4 by @dependabot in #1492
• Bump optuna from 3.2.0 to 3.3.0 by @dependabot in #1491
• Bump ipykernel from 6.25.0 to 6.25.1 by @dependabot in #1493
• Bump autots from 0.5.8 to 0.6.0 by @dependabot in #1494
• Bump pyright from 1.1.320 to 1.1.321 by @dependabot in #1495
• Bump pyright from 1.1.321 to 1.1.322 by @dependabot in #1496
• Bump pyright from 1.1.322 to 1.1.323 by @dependabot in #1497
• Bump certifi from 2023.5.7 to 2023.7.22 by @dependabot in #1498
• Bump tornado from 6.3.2 to 6.3.3 by @dependabot in #1499
• Bump sphinx-rtd-theme from 1.2.2 to 1.3.0 by @dependabot in #1500
• Bump pyright from 1.1.323 to 1.1.324 by @dependabot in #1503
• Bump pyarrow from 12.0.1 to 13.0.0 by @dependabot in #1502
• docs; close #1504 by @lisphilar in #1505
• Bump pca from 2.0.4 to 2.0.5 by @dependabot in #1506
• Show data flow diagram of CovsirPhy on README by @lisphilar in #1508
• Bump nbsphinx from 0.9.2 to 0.9.3 by @dependabot in #1509
• Fix errors regarding pandas version 2.1.0 release by @lisphilar in #1512
• Bump ipykernel from 6.25.1 to 6.25.2 by @dependabot in #1517
• Bump pytest from 7.4.0 to 7.4.2 by @dependabot in #1520
• Bump pyright from 1.1.324 to 1.1.326 by @dependabot in #1519
• Bump loguru from 0.7.0 to 0.7.1 by @dependabot in #1518
• Bump loguru from 0.7.1 to 0.7.2 by @dependabot in #1521
• Bump matplotlib from 3.7.2 to 3.7.3 by @dependabot in #1522
• Bump ipywidgets from 8.1.0 to 8.1.1 by @dependabot in #1523
• Bump pyright from 1.1.326 to 1.1.327 by @dependabot in #1524
• Bump pillow from 10.0.0 to 10.0.1 by @dependabot in #1525
• Bump typing-extensions from 4.7.1 to 4.8.0 by @dependabot in #1526
• Bump unidecode from 1.3.6 to 1.3.7 by @dependabot in #1527
• Bump pyright from 1.1.327 to 1.1.328 by @dependabot in #1528
• Bump pyright from 1.1.328 to 1.1.329 by @dependabot in #1529
• Bump urllib3 from 2.0.4 to 2.0.6 by @dependabot in #1530
• Bump pyright from 1.1.329 to 1.1.330.post0 by @dependabot in #1532
• Bump pyright from 1.1.330.post0 to 1.1.331 by @dependabot in #1533
• Bump pillow from 10.0.1 to 10.1.0 by @dependabot in #1534
• Bump optuna from 3.3.0 to 3.4.0 by @dependabot in #1535
• Bump urllib3 from 2.0.6 to 2.0.7 by @dependabot in #1536
• Bump pyright from 1.1.331 to 1.1.332 by @dependabot in #1537
• Bump pytest from 7.4.2 to 7.4.3 by @dependabot in #1538
• Bump ipykernel from 6.25.2 to 6.26.0 by @dependabot in #1540
• Bump pyright from 1.1.332 to 1.1.333 by @dependabot in #1539
• Bump pyarrow from 13.0.0 to 14.0.0 by @dependabot in #1541
• Bump pyright from 1.1.333 to 1.1.334 by @dependabot in #1542
• Bump pyright from 1.1.334 to 1.1.335 by @dependabot in #1545
• Bump pyarrow from 14.0.0 to 14.0.1 by @dependabot in #1544
• Bump country-converter from 1.0.0 to 1.1.1 by @dependabot in #1546
• Bump pyright from 1.1.335 to 1.1.336 by @dependabot in #1547
• Bump matplotlib from 3.7.3 to 3.7.4 by @dependabot in #1548
• Bump ipykernel from 6.26.0 to 6.27.0 by @dependabot in #1549
• Bump pyright from 1.1.336 to 1.1.337 by @dependabot in #1550
• Bump ipykernel from 6.27.0 to 6.27.1 by @dependabot in #1551
• Bump sphinx-rtd-theme from 1.3.0 to 2.0.0 by @dependabot in #1553
• Bump docutils from 0.16 to 0.19 by @dependabot in #1555
• Bump pyright from 1.1.337 to 1.1.338 by @dependabot in #1554
• Bump jupyter-server from 2.7.3 to 2.11.2 by @dependabot in #1556
• Bump ruptures from 1.1.8 to 1.1.9 by @dependabot in #1561
• Bump typing-extensions from 4.8.0 to 4.9.0 by @dependabot in #1559
• Bump optuna from 3.4.0 to 3.5.0 by @dependabot in #1558
• Bump country-converter from 1.1.1 to 1.2 by @dependabot in #1562
• Bump pyarrow from 14.0.1 to 14.0.2 by @dependabot in #1565
• Bump fonttools from 4.42.1 to 4.43.0 by @dependabot in #1576
• Bump jinja2 from 3.1.2 to 3.1.3 by @dependabot in #1577
• Bump unidecode from 1.3.7 to 1.3.8 by @dependabot in #1578
• Bump ipykernel from 6.27.1 to 6.29.0 by @dependabot in #1580
• Bump jupyter-lsp from 2.2.0 to 2.2.2 by @dependabot in #1581
• Bump jupyterlab from 4.0.5 to 4.0.11 by @dependabot in #1584
• Bump notebook from 7.0.3 to 7.0.7 by @dependabot in #1583
• Drop Python 3.8 and add Python 3.12 support by @lisphilar in #1593

Full Changelog: 3.0.0...3.1.0