Skip to content

A DNAnexus applet for running hail.is python scripts

Notifications You must be signed in to change notification settings

lindgrengroup/hail-minimal

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
 
 
 
 
 
 

Repository files navigation

hail-minimal

Description

A minimal DNAnexus applet allowing the execution of Hail python scripts.

Features

Applet startup time is 3 minutes compared to dxjupyterlab-spark-cluster's > 10 minutes. This applet also support's python script files.

DNAnexus Instances

My intuition is that hail will perform much faster on a single spark instance with many CPUs compared with many spark instances with less CPUs. Will do some benchmarking to test this hypothesis and update this text. If this turns out to be true then the ability to use single DNAnexus instances of up to 96CPU's and 768GB RAM should be more than enough for most use-cases.

Note mem4_ssd1_x128 exists with 128 CPU cores and 1952GB RAM - £5.9264/hr spot price

About

A DNAnexus applet for running hail.is python scripts

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published