lightning-auriga
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interpolate-genetic-position Public
Use reference genetic map to interpolate genetic position for a query set of variants
C++ MIT License UpdatedDec 20, 2024 -
Draft gentoo ebuild repository
Shell MIT License UpdatedOct 10, 2024 -
construct pangenome from unaligned reads
Python MIT License UpdatedSep 20, 2024 -
servo Public
Forked from servo/servoServo, the embeddable, independent, memory-safe, modular, parallel web rendering engine
Rust Mozilla Public License 2.0 UpdatedSep 11, 2024 -
reproducibly estimate parameters for VerifyBamID2 for a new reference genome
Python MIT License UpdatedSep 4, 2024 -
freebayes Public
Forked from freebayes/freebayesBayesian haplotype-based genetic polymorphism discovery and genotyping.
C++ MIT License UpdatedJun 7, 2024 -
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wgs-validation Public
Forked from UCI-GREGoR/wgs-validationSnakemake workflow for validation of variant calls
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 24, 2024 -
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wgs-downstream Public
Forked from UCI-GREGoR/wgs-downstreamAssorted short read WGS post-alignment tooling
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wgs-calling Public
Forked from UCI-GREGoR/wgs-callingShort read WGS calling for PMGRC/GREGoR
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54gene-wgs-germline Public
Forked from bballew/54gene-wgs-germlineForked from https://gitlab.com/data-analysis5/dna-sequencing/54gene-wgs-germline
Python MIT License UpdatedDec 15, 2023 -
Compute imputed variant exclusion lists based on https://doi.org/10.1002%2Fgepi.21603
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hap.py Public
Forked from Illumina/hap.pyHaplotype VCF comparison tools
C++ Other UpdatedDec 7, 2023 -
snakemake_unit_tests Public
Candidate supplement to snakemake --generate-unit-tests with more compatible use cases and flexibility.
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Snakemake module to populate genetic position in a variant annotation file
UpdatedOct 25, 2023 -
ExpansionHunter Public
Forked from Illumina/ExpansionHunterA tool for estimating repeat sizes
C++ Apache License 2.0 UpdatedSep 17, 2023 -
Cyrius Public
Forked from Illumina/CyriusA tool to genotype CYP2D6 with WGS data
Python GNU General Public License v3.0 UpdatedSep 17, 2023 -
SMNCopyNumberCaller Public
Forked from Illumina/SMNCopyNumberCallerA copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS
Python Apache License 2.0 UpdatedSep 17, 2023 -
statgen-mi Public
multiple imputation for association studies
Python GNU General Public License v3.0 UpdatedAug 22, 2023 -
cookiecutter-cxx-software Public
Forked from NCI-CGR/cookiecutter-cxx-softwarecookiecutter template for autotools-powered C++ software package, with various quirks mixed in
M4 MIT License UpdatedAug 22, 2023 -
gwas-winners-curse Public
tool for probabilistic correction of Winner's Curse in two-stage GWAS
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cgrtelomeres Public
Forked from NCI-CGR/cgrtelomeresAutomated Processing of Telomere qPCR Data
R Other UpdatedAug 22, 2023 -
plco-analysis Public
Forked from NCI-CGR/plco-analysisPrimary workflow for the PLCO "Atlas" project
Shell UpdatedAug 22, 2023 -
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process.phenotypes Public
automated phenotype standardization and reporting
R Other UpdatedAug 21, 2023