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✅
|
| Descriptor | Linter | Files | Fixed | Errors | Warnings | Elapsed time |
|---|---|---|---|---|---|---|
| jscpd | yes | 12 | no | 2.33s | ||
| jsonlint | 21 | 1 | 0 | 0.43s | ||
| prettier | 21 | 0 | 1 | 0 | 0.47s | |
| ✅ JSON | v8r | 21 | 0 | 0 | 5.94s | |
| ruff | yes | yes | 121 | no | 2.26s | |
| ✅ SPELL | cspell | 163 | 0 | 0 | 4.56s | |
| ✅ YAML | prettier | 4 | 0 | 0 | 0 | 0.5s |
| ✅ YAML | v8r | 4 | 0 | 0 | 4.49s | |
| ✅ YAML | yamllint | 4 | 0 | 0 | 0.44s |
Detailed Issues
⚠️ COPYPASTE / jscpd - 12 errors
Clone found (python):
- src/liblaf/melon/io/paraview/series/_shared.py [6:1 - 18:2] (12 lines, 104 tokens)
src/liblaf/melon/io/paraview/series/_writer.py [16:1 - 28:2]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [31:5 - 36:6] (5 lines, 81 tokens)
exp/2025/04/30/human-head-anatomy/src/34-muscles.py [38:5 - 43:6]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py [80:7 - 86:15] (6 lines, 82 tokens)
exp/2025/04/30/human-head-anatomy/src/34-muscles.py [99:11 - 105:23]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/31-inspect-volumns.py [17:5 - 23:8] (6 lines, 101 tokens)
exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py [17:5 - 23:4]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/30-inspect-muscles.py [13:21 - 21:8] (8 lines, 77 tokens)
exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py [13:30 - 21:14]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/23-split-components.py [20:1 - 50:4] (30 lines, 315 tokens)
exp/2025/04/30/human-head-anatomy/src/40-gen-expression.py [11:1 - 41:6]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/21-shortest-path-skin.py [34:5 - 47:2] (13 lines, 196 tokens)
exp/2025/04/30/human-head-anatomy/src/22-shortest-path.py [36:5 - 49:2]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/15-find-jaw-pivot.py [6:1 - 17:7] (11 lines, 103 tokens)
exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py [7:1 - 18:5]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py [19:33 - 42:2] (23 lines, 219 tokens)
exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py [19:34 - 42:2]
Clone found (python):
- exp/2025/04/30/human-head-anatomy/src/12-register-skin.py [28:30 - 38:23] (10 lines, 120 tokens)
exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py [20:5 - 29:7]
Clone found (python):
- src/liblaf/melon/tri/_wrapping.py [13:1 - 22:5] (9 lines, 108 tokens)
src/liblaf/melon/external/wrap/_fast_wrapping.py [17:1 - 26:17]
Clone found (python):
- src/liblaf/melon/tetra/_transfer.py [15:33 - 22:17] (7 lines, 89 tokens)
src/liblaf/melon/tri/_transfer.py [21:20 - 28:9]
┌────────┬────────────────┬─────────────┬──────────────┬──────────────┬──────────────────┬───────────────────┐
│ Format │ Files analyzed │ Total lines │ Total tokens │ Clones found │ Duplicated lines │ Duplicated tokens │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ python │ 103 │ 3169 │ 31458 │ 12 │ 140 (4.42%) │ 1595 (5.07%) │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ bash │ 9 │ 221 │ 1440 │ 0 │ 0 (0%) │ 0 (0%) │
├────────┼────────────────┼─────────────┼──────────────┼──────────────┼──────────────────┼───────────────────┤
│ Total: │ 112 │ 3390 │ 32898 │ 12 │ 140 (4.13%) │ 1595 (4.85%) │
└────────┴────────────────┴─────────────┴──────────────┴──────────────┴──────────────────┴───────────────────┘
Found 12 clones.
HTML report saved to megalinter-reports/copy-paste/html/
ERROR: jscpd found too many duplicates (4.13%) over threshold (0%)
Error: ERROR: jscpd found too many duplicates (4.13%) over threshold (0%)
at ThresholdReporter.report (/node-deps/node_modules/@jscpd/finder/dist/index.js:612:13)
at /node-deps/node_modules/@jscpd/finder/dist/index.js:110:18
at Array.forEach (<anonymous>)
at /node-deps/node_modules/@jscpd/finder/dist/index.js:109:22
at async /node-deps/node_modules/jscpd/dist/jscpd.js:351:5
⚠️ JSON / jsonlint - 1 error
File: .vscode/settings.json
Parse error on line 26, column 5:
....customTags": [ // ref: <https://squ...
----------------------^
Unexpected token "/"
⚠️ JSON / prettier - 1 error
.config/linters/pyrightconfig.json 52ms (unchanged)
.config/release-please/config.json 14ms (unchanged)
.github/renovate.json 1ms (unchanged)
.vscode/settings.json 8ms (unchanged)
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/XYZ_ReadyToSculpt_eyesOpen_PolyGroups_GEO.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:74cac07560a0ac93e15b334d49841c637a59a44de0708f7aaf08cbcbf2e8f469
[error] 3 | size 719
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:766aedc9c892ef6cc830caffe266bcd28fb8fd00d9a144533e2c4739bb266cbd
[error] 3 | size 429
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/face.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:e458b1bb67aa33ac9db931cb0d6d6d685429cfb7d46417c1b333af46924ad85f
[error] 3 | size 800
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:f1e16d8631ac4cc730978f0422778d005ce78102daf535fdfe7b745259b86e3a
[error] 3 | size 476
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/01-raw/sculptor/skull.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:4df392ea2d66a5057ceefc7b5191760f6791e48bcfda3b55a3138f91f26989ff
[error] 3 | size 1215
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/11-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error] 3 | size 719
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/12-skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:018f3bce8052b47b9a953ec89a9703fdd68c16454ba3e8bd849aab4eb9b6da6d
[error] 3 | size 719
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error] 3 | size 430
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/13-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error] 3 | size 474
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-cranium.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:45e42f3615dfd055ca57fd118c2c4b9a87dd20480fb79b8954b44feaf295cecb
[error] 3 | size 430
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/14-mandible.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:2ad40f18b58f1870f85705d3583e7b09d182bc2a110884a40dee313da812285b
[error] 3 | size 474
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin-with-mouth-socket.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:5846defd42970713d2bcdd08b798fd2653346de4662129e1fffbe4521b41f1ad
[error] 3 | size 715
[error] 4 |
[error] exp/2025/04/30/human-head-anatomy/data/02-intermediate/skin.landmarks.json: SyntaxError: The input should contain exactly one expression, but the first expression is followed by the unexpected character `h`. (1:9)
[error] > 1 | version https://git-lfs.github.com/spec/v1
[error] | ^
[error] 2 | oid sha256:8a9430700a2b0e825304625d59107487f31f39c67421260dd9949f57b267ad3f
[error] 3 | size 804
[error] 4 |
pyrightconfig.json 2ms (unchanged)
tmp.6NE8UxMvCk/.cspell.json 3ms (unchanged)
tmp.6NE8UxMvCk/linters/pyrightconfig.json 3ms (unchanged)
tmp.6NE8UxMvCk/renovate-config.json 3ms (unchanged)
⚠️ PYTHON / ruff - 121 errors
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/cubic/src/10-gen.py:26:40
|
24 | for cid, cell in enumerate(tetmesh.cell):
25 | cell: pv.Cell
26 | barycentric: Float[np.ndarray, "N 3"] = melon.sample_barycentric_coords(
| ^^^^^
27 | (cfg.n_samples, 4)
28 | )
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/cubic/src/10-gen.py:29:36
|
27 | (cfg.n_samples, 4)
28 | )
29 | samples: Float[np.ndarray, "N 3"] = melon.barycentric_to_points(
| ^^^^^
30 | einops.repeat(cell.points, "B D -> N B D", N=cfg.n_samples), barycentric
31 | )
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/cubic/src/10-gen.py:32:33
|
30 | einops.repeat(cell.points, "B D -> N B D", N=cfg.n_samples), barycentric
31 | )
32 | is_in: Bool[np.ndarray, " N"] = melon.tri.contains(muscle, samples)
| ^^^^
33 | tetmesh.cell_data["muscle-fraction"][cid] = (
34 | np.count_nonzero(is_in) / cfg.n_samples
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/11-fix-skin.py:25:37
|
23 | skin_right.translate([left_xmax - right_xmin, 0.0, 0.0], inplace=True)
24 | skin: pv.PolyData = pv.merge([skin_right, skin_left])
25 | edge_lengths: Float[np.ndarray, " E"] = melon.tri.compute_edge_lengths(skin)
| ^^^^
26 | skin.clean(tolerance=0.5 * edge_lengths.min(), inplace=True, absolute=True)
27 | melon.save(cfg.output, skin)
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/12-register-skin.py:35:41
|
33 | source.clean(inplace=True)
34 | target: pv.PolyData = melon.load_polydata(cfg.target)
35 | source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
| ^^^^^
36 | target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/12-register-skin.py:36:41
|
34 | target: pv.PolyData = melon.load_polydata(cfg.target)
35 | source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
36 | target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
| ^^^^^
37 |
38 | free_polygons_floating: Integer[np.ndarray, " F"] = melon.tri.select_groups(
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/12-register-skin.py:38:49
|
36 | target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
37 |
38 | free_polygons_floating: Integer[np.ndarray, " F"] = melon.tri.select_groups(
| ^^^^
39 | source, cfg.floting
40 | )
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py:27:41
|
25 | source.clean(inplace=True)
26 | target: pv.PolyData = melon.load_polydata(cfg.target)
27 | source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
| ^^^^^
28 | target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
29 | result: pv.PolyData = melon.tri.fast_wrapping(
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/14-register-cranium.py:28:41
|
26 | target: pv.PolyData = melon.load_polydata(cfg.target)
27 | source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
28 | target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
| ^^^^^
29 | result: pv.PolyData = melon.tri.fast_wrapping(
30 | source,
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py:27:41
|
25 | source.clean(inplace=True)
26 | target: pv.PolyData = melon.load_polydata(cfg.target)
27 | source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
| ^^^^^
28 | target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
29 | result: pv.PolyData = melon.tri.fast_wrapping(
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/14-register-mandible.py:28:41
|
26 | target: pv.PolyData = melon.load_polydata(cfg.target)
27 | source_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.source)
28 | target_landmarks: Float[np.ndarray, "L 3"] = melon.load_landmarks(cfg.target)
| ^^^^^
29 | result: pv.PolyData = melon.tri.fast_wrapping(
30 | source,
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:22:23
|
20 | def classify(
21 | surface: pv.PolyData, include: pv.PolyData, exclude: pv.PolyData
22 | ) -> Bool[np.ndarray, " N"]:
| ^^^^
23 | nearest_algo: melon.NearestAlgorithm = melon.NearestPointOnSurface(
24 | distance_threshold=np.inf,
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:34:34
|
32 | exclude, surface, algo=nearest_algo
33 | )
34 | is_include: Bool[np.ndarray, " N"] = (
| ^^^^
35 | nearest_include["distance"] <= nearest_exclude["distance"]
36 | )
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:43:36
|
41 | tetmesh: pv.UnstructuredGrid, surface: pv.PolyData, data_name: str
42 | ) -> pv.UnstructuredGrid:
43 | point_ids: Integer[np.ndarray, " N"] = surface.point_data["point-id"]
| ^^^^
44 | data: Bool[np.ndarray, " N"] = np.zeros((tetmesh.n_points,), dtype=bool)
45 | data[point_ids[surface.point_data[data_name]]] = True
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/23-split-components.py:44:28
|
42 | ) -> pv.UnstructuredGrid:
43 | point_ids: Integer[np.ndarray, " N"] = surface.point_data["point-id"]
44 | data: Bool[np.ndarray, " N"] = np.zeros((tetmesh.n_points,), dtype=bool)
| ^^^^
45 | data[point_ids[surface.point_data[data_name]]] = True
46 | tetmesh.point_data[data_name] = data
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py:31:39
|
30 | for muscle in muscles:
31 | components: Float[np.ndarray, " 3"] = melon.as_trimesh(
| ^^^^
32 | muscle
33 | ).principal_inertia_components
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py:34:36
|
32 | muscle
33 | ).principal_inertia_components
34 | vectors: Float[np.ndarray, "3 3"] = melon.as_trimesh(
| ^^^^^
35 | muscle
36 | ).principal_inertia_vectors
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/32-muscle-direction.py:37:36
|
35 | muscle
36 | ).principal_inertia_vectors
37 | index: Integer[np.ndarray, " 3"] = np.argsort(components)
| ^^^^
38 | muscle.field_data["moment-inertia"] = melon.as_trimesh(muscle).moment_inertia
39 | muscle.field_data["principal-inertia-vectors"] = vectors[index]
|
F722 Syntax error in forward annotation: Unexpected token at the end of an expression
--> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:43:36
|
41 | for muscle in muscles:
42 | muscle_tm: tm.Trimesh = melon.as_trimesh(muscle)
43 | vectors: Float[np.ndarray, "3 3"] = muscle_tm.principal_inertia_vectors
| ^^^^^
44 | components: Float[np.ndarray, " 3"] = muscle_tm.principal_inertia_components
45 | index: Integer[np.ndarray, " 3"] = np.argsort(components)
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:44:39
|
42 | muscle_tm: tm.Trimesh = melon.as_trimesh(muscle)
43 | vectors: Float[np.ndarray, "3 3"] = muscle_tm.principal_inertia_vectors
44 | components: Float[np.ndarray, " 3"] = muscle_tm.principal_inertia_components
| ^^^^
45 | index: Integer[np.ndarray, " 3"] = np.argsort(components)
46 | muscle.field_data["muscle-direction"] = vectors[index[0]]
|
F722 Syntax error in forward annotation: Expected an expression
--> exp/2025/04/30/human-head-anatomy/src/33-muscle-fraction.py:45:36
|
43 | vectors: Float[np.ndarray, "3 3"] = muscle_tm.principal_inertia_vectors
44 | components: Float[np.ndarray, " 3"] = muscle_tm.principal_inertia_c
(Truncated to 10000 characters out of 54826)
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🤖 I have created a release beep boop
0.8.2 (2025-10-29)
🐛 Bug Fixes
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