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lhallee/README.md

Logan Hallee

CSO and Founder of Synthyra, a Public Benefit LLC building computational protein science systems. Research Fellow at the University of Delaware. I completed my PhD in Bioinformatics Data Science in the Gleghorn Lab. I work on protein language models, protein-protein interaction prediction, generative models for protein design, and open-source pLM tooling. I also write Minds and Molecules, a blog on science, computation, and philosophy.

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Last updated: May 2026

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  1. Gleghorn-Lab/AnnotationVocabulary Gleghorn-Lab/AnnotationVocabulary Public

    Jupyter Notebook 7

  2. Gleghorn-Lab/Mixture-of-Experts-Sentence-Similarity Gleghorn-Lab/Mixture-of-Experts-Sentence-Similarity Public

    Python 16 1

  3. Gleghorn-Lab/Protify Gleghorn-Lab/Protify Public

    Low code molecular property prediction

    Python 11 7

  4. Synthyra/FastPLMs Synthyra/FastPLMs Public

    Python 41 7

  5. Gleghorn-Lab/SpeedrunningPLMs Gleghorn-Lab/SpeedrunningPLMs Public

    Forked from KellerJordan/modded-nanogpt

    Speedrunning PLM pretraining

    Python 12 1

  6. Gleghorn-Lab/DSM Gleghorn-Lab/DSM Public

    Protein representation and design under a single training scheme

    Python 24 2