added -B/-E to trimfq for keeping first/last INT bp" #38
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added -B/-E to trimfq for keeping first/last INT bp"
fixing bugs and also "shortcircuting" the case when param == 0
fixing bugs
fixing description
Updated with -B/-E for trimfq examples
seqtk.c
Outdated
fixed typo "rigth" to "right"
Author
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Thx! Fixed! |
updated version string to 1.0-r68a-dirty
Added the possibility to use simultaneously in trimfq: a) -e with -E, and b) -b with -B.
Added examples for use simultaneously use with trimfq of: a) -e with -E, and b) -b with -B.
setting the minimum length
the minimum reads after the trimming is 1 instead of zero (no reads with length 0 are created)
fixes
fixes bugs and descriptions of "trimfq -l"
Adding example for "trimfq -l" usage with other trimming options.
trying to fix locally the bug where reads with no sequence are converted to FASTA format in TRIMFQ and also setting be default "trimfq -l" to 1 instead of 30.
fixing bug in trimfq
fixed bugs regarding trimfq
updated to the version string to: 1.0-r68e-dirty
Author
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These additions/patches are used heavily by FusionCatcher (which has a lot of users and also brings a lot of users to SeqTK tools) and therefore it would be great if they would be merged into the master branch! |
Owner
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4 tasks
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added -B/-E to trimfq for keeping first/last INT bp"