Failed << pointmatcher_ros:make [ Exited with code 2 ]

[AndrewWu1998]

Thank you very much for your work. I have this problem when running catkin build icp_localization, and it seems to remain me that there are some system files that were missing, not sure where to go...

Here's part of the output information, running on Ubuntu20.04, and file path in:
~/carto_ws/src/icp_localization
~/carto_ws/src/libnabo
~/carto_ws/src/libpointmatcher
~/carto_ws/src/pointmatcher-ros
Terminal Output:
`..........................................................................................
Finished <<< libpointmatcher [ 1 minute and 6.1 seconds ]
Starting >>> pointmatcher_ros

---

Warnings << pointmatcher_ros:cmake /home/sim2real/carto_ws/logs/pointmatcher_ros/build.cmake.000.log
CMake Warning at /opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:896 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1018 (_Boost_COMPONENT_DEPENDENCIES)
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1694 (_Boost_MISSING_DEPENDENCIES)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:134 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:314 (find_boost)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:551 (find_external_library)
CMakeLists.txt:30 (find_package)

CMake Warning at /opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:896 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1018 (_Boost_COMPONENT_DEPENDENCIES)
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1694 (_Boost_MISSING_DEPENDENCIES)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:134 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:314 (find_boost)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:551 (find_external_library)
CMakeLists.txt:30 (find_package)

CMake Warning at /opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:896 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1018 (_Boost_COMPONENT_DEPENDENCIES)
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1694 (_Boost_MISSING_DEPENDENCIES)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:134 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:314 (find_boost)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:551 (find_external_library)
CMakeLists.txt:30 (find_package)

CMake Warning at /opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:896 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1018 (_Boost_COMPONENT_DEPENDENCIES)
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1694 (_Boost_MISSING_DEPENDENCIES)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:134 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:314 (find_boost)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:551 (find_external_library)
CMakeLists.txt:30 (find_package)

CMake Warning at /opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:896 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1018 (_Boost_COMPONENT_DEPENDENCIES)
/opt/cmake/share/cmake-3.14/Modules/FindBoost.cmake:1694 (_Boost_MISSING_DEPENDENCIES)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:134 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:314 (find_boost)
/usr/lib/x86_64-linux-gnu/cmake/pcl/PCLConfig.cmake:551 (find_external_library)
CMakeLists.txt:30 (find_package)

** WARNING ** io features related to pcap will be disabled
** WARNING ** io features related to png will be disabled
** WARNING ** io features related to libusb-1.0 will be disabled
cd /home/sim2real/carto_ws/build/pointmatcher_ros; catkin build --get-env pointmatcher_ros | catkin env -si /usr/local/bin/cmake /home/sim2real/carto_ws/src/pointmatcher-ros --no-warn-unused-cli -DCATKIN_DEVEL_PREFIX=/home/sim2real/carto_ws/devel/.private/pointmatcher_ros -DCMAKE_INSTALL_PREFIX=/home/sim2real/carto_ws/install; cd -

..........................................................................................

---

Errors << pointmatcher_ros:make /home/sim2real/carto_ws/logs/pointmatcher_ros/build.make.000.log
In file included from /usr/include/c++/9/complex:44,
from /usr/include/eigen3/Eigen/Core:96,
from /usr/include/eigen3/Eigen/StdVector:14,
from /home/sim2real/carto_ws/src/libpointmatcher/pointmatcher/PointMatcher.h:47,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/serialization.h:5,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/serialization.cpp:3:
/usr/include/c++/9/cmath:45:15: fatal error: math.h: No such file or directory
45 | #include_next <math.h>
| ^~~~~~~~
In file included from /usr/include/c++/9/complex:44,
from /usr/include/eigen3/Eigen/Core:96,
from /usr/include/eigen3/Eigen/StdVector:14,
from /home/sim2real/carto_ws/src/libpointmatcher/pointmatcher/PointMatcher.h:47,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/deserialization.h:5,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/deserialization.cpp:3:
/usr/include/c++/9/cmath:45:15: fatal error: math.h: No such file or directory
45 | #include_next <math.h>
| ^~~~~~~~
compilation terminated.
compilation terminated.
In file included from /usr/include/c++/9/complex:44,
from /usr/include/eigen3/Eigen/Core:96,
from /usr/include/eigen3/Eigen/Dense:1,
from /usr/include/eigen3/Eigen/Eigen:1,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/transform.h:5,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/transform.cpp:2:
/usr/include/c++/9/cmath:45:15: fatal error: math.h: No such file or directory
45 | #include_next <math.h>
| ^~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:76: CMakeFiles/pointmatcher_ros.dir/src/deserialization.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:89: CMakeFiles/pointmatcher_ros.dir/src/serialization.cpp.o] Error 1
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:102: CMakeFiles/pointmatcher_ros.dir/src/transform.cpp.o] Error 1
In file included from /usr/include/c++/9/ext/string_conversions.h:41,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /opt/ros/noetic/include/ros/platform.h:38,
from /opt/ros/noetic/include/ros/time.h:53,
from /opt/ros/noetic/include/ros/ros.h:38,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/helper_functions.h:4,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/helper_functions.cpp:2:
/usr/include/c++/9/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
75 | #include_next <stdlib.h>
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:63: CMakeFiles/pointmatcher_ros.dir/src/helper_functions.cpp.o] Error 1
In file included from /usr/include/c++/9/complex:44,
from /usr/include/eigen3/Eigen/Core:96,
from /usr/include/eigen3/Eigen/StdVector:14,
from /home/sim2real/carto_ws/src/libpointmatcher/pointmatcher/PointMatcher.h:47,
from /home/sim2real/carto_ws/src/libpointmatcher/pointmatcher/IO.h:39,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/RosPointCloud2Deserializer.h:7,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/RosPointCloud2Deserializer.cpp:2:
/usr/include/c++/9/cmath:45:15: fatal error: math.h: No such file or directory
45 | #include_next <math.h>
| ^~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:141: CMakeFiles/pointmatcher_ros.dir/src/RosPointCloud2Deserializer.cpp.o] Error 1
In file included from /usr/include/c++/9/ext/string_conversions.h:41,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/PmTf.h:4,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/PmTf.cpp:2:
/usr/include/c++/9/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
75 | #include_next <stdlib.h>
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:115: CMakeFiles/pointmatcher_ros.dir/src/PmTf.cpp.o] Error 1
In file included from /usr/include/c++/9/ext/string_conversions.h:41,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/istream:38,
from /usr/include/c++/9/sstream:38,
from /opt/ros/noetic/include/ros/console.h:38,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/PointMatcherFilterInterface.h:4,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/PointMatcherFilterInterface.cpp:2:
/usr/include/c++/9/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
75 | #include_next <stdlib.h>
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:128: CMakeFiles/pointmatcher_ros.dir/src/PointMatcherFilterInterface.cpp.o] Error 1
In file included from /usr/include/c++/9/ext/string_conversions.h:41,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/stdexcept:39,
from /usr/include/c++/9/array:39,
from /usr/include/c++/9/tuple:39,
from /usr/include/c++/9/bits/unique_ptr.h:37,
from /usr/include/c++/9/memory:80,
from /home/sim2real/carto_ws/src/pointmatcher-ros/include/pointmatcher_ros/StampedPointCloud.h:4,
from /home/sim2real/carto_ws/src/pointmatcher-ros/src/StampedPointCloud.cpp:2:
/usr/include/c++/9/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
75 | #include_next <stdlib.h>
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [CMakeFiles/pointmatcher_ros.dir/build.make:154: CMakeFiles/pointmatcher_ros.dir/src/StampedPointCloud.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1899: CMakeFiles/pointmatcher_ros.dir/all] Error 2
make: *** [Makefile:141: all] Error 2
cd /home/sim2real/carto_ws/build/pointmatcher_ros; catkin build --get-env pointmatcher_ros | catkin env -si /usr/bin/make --jobserver-auth=3,4; cd -

..........................................................................................
Failed << pointmatcher_ros:make [ Exited with code 2 ]
Failed <<< pointmatcher_ros [ 2.5 seconds ]
Abandoned <<< icp_localization [ Unrelated job failed ]
[build] Summary: 3 of 5 packages succeeded.
[build] Ignored: 4 packages were skipped or are skiplisted.
[build] Warnings: 2 packages succeeded with warnings.
[build] Abandoned: 1 packages were abandoned.
[build] Failed: 1 packages failed.
[build] Runtime: 1 minute and 17.4 seconds total.
[build] Note: Workspace packages have changed, please re-source setup files to use them.`

[jelavice]

Hi AndrewWu

@AndrewWu1998 thank you for your patience with the answer, unfortunately, I cannot reproduce the problem on my machine.
which boost and GCC version do you use? I can compile successfully with gcc version 9.4.0 and boost version 1.71

Did you try any of the proposed solutions from below?
https://stackoverflow.com/questions/40262928/error-compiling-opencv-fatal-error-stdlib-h-no-such-file-or-directory