Mitigating Spatial Bias Through Geographical Complexity

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Contour plot functions for R

US Neighborhood data in GeoJSON format from OpenSource Zillow Neighborhood Boundaries Shapefiles

R package for Gaussian process modeling

spmoran: An R package for spatial/spatio-temporal regression modeling

A unifying bioinformatics framework for organelle proteomics

Scalable thin plate spline model to analyze spatially resolved transcirptomics data

Method for segmentation of spatial domains with smooth boundaries and clustering in spatial transcriptomics

A free and open-source Train Simulator Classic mod for Northeast Corridor locomotives.

CRAN as Ubuntu Binaries

Community list of transit APIs, apps, datasets, research, and software 🚌🌟🚋🌟🚂

ScaLAPACK development repository

Quick serialization of R objects

R package for fast and accurate raster zonal statistics

Save and load SpatialExperiment objects to file

Quantifying metabolism activity at the single-cell resolution

Spatially-aware quality control for spatial transcriptomics

Deep Generative Modeling of RNA Velocity

Multi-omic velocity inference

Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq data

a tool for mapping free-text descriptions of entities to ontology terms

Protégé plugin for creating OWL ontologies from spreadsheets

GPUmatrix: An R package for algebra using GPU

A WebGPU Graphics Device for R

A lightweight library for portable low-level GPU computation using WebGPU.