Commits

History for

Commits on Sep 15, 2016

Clarified usage of consensus, resolves samtools#480
pd3
committed

Commits on Sep 2, 2016

New bcftools/csq command, regidx overhaul and new %TBCSQ query format.
pd3
committed

Commits on Aug 5, 2016

regidx: import regidx api from htslib into bcftools
mcshane
committed

Commits on Jun 2, 2016

consensus: handle variants which overlap region boundaries

pd3
authored and
mcshane
committed

Commits on Mar 15, 2016

getopt_long() returns int, not char
jmarshall
committed

Commits on Sep 14, 2015

Fix in consensus, last position in the buffer was not updated. Resolves samtools#306

pd3
authored and
mcshane
committed

Commits on Aug 7, 2015

Check that opening chain and output files succeeded
jmarshall
committed

Commits on Dec 15, 2014

Bug fixes in consensus
pd3
committed
New -c/--chain option in bcftools-consensus

jherrero
authored and
pd3
committed
Add support for <DEL> in bcf-consensus

jherrero
authored and
pd3
committed

Commits on Oct 21, 2014

Do not use 0x80 & co for missing alleles
pd3
committed

Commits on Oct 20, 2014

use new htslib file type detection and error reporting API
pd3
committed

Commits on Oct 1, 2014

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