TreeSwitchR

TreeSwitchR visualize phylogenetic trees along chromosomes in R.

Given a tree file and the corresponding genomic positions, trees are visualized and compared to their corresponding neighbors. Tree topology switches as well as their underlying genomic features are highlighted.

Installation instructions

Get the latest stable R release from CRAN. Then install the TreeSwitchR development version from GitHub with:

devtools::install_github("kullrich/TreeSwitchR", dependencies = TRUE)

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