Update StarAlign.wdl

kshakir · Mar 21, 2024 · 1fd4d09 · 1fd4d09
1 parent 511a3c7
commit 1fd4d09
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/tasks/skylab/StarAlign.wdl b/tasks/skylab/StarAlign.wdl
@@ -527,7 +527,7 @@ task MergeStarOutput {
 
     # Running star for combined cell matrix
     # outputs will be called outputbarcodes.tsv. outputmatrix.mtx, and outputfeatures.tsv
-    STAR --runMode soloCellFiltering ./matrix ./output --soloCellFilter EmptyDrops_CR
+    STAR --runMode soloCellFiltering ./matrix ./output --soloCellFilter CellRanger2.2
 
     #list files
     echo "listing files"