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WIP - Faster load of binderhub #27

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WIP - Faster load of binderhub #27

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13 changes: 13 additions & 0 deletions Dockerfile
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# image - sudosk/mosotf:latest

# continuumio/miniconda3:4.8.2
FROM continuumio/miniconda3@sha256:456e3196bf3ffb13fee7c9216db4b18b5e6f4d37090b31df3e0309926e98cfe2

LABEL authors="sangramsahu15@gmail.com" \
description="Docker image containing dependencies for krassowski/multi-omics-state-of-the-field"

COPY environment.yml /

RUN apt-get update && \
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@krassowski krassowski Nov 14, 2020 •
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I guess will also need to install deps from apt.txt.

I manually created a conda environment for Binder because it is faster than compiling the R dependencies, but if we are pre-building (and if possible) a better alternative might be to install from requirements.txt and restore R dependencies with renv as described in our README.

conda env update -f /environment.yml -n root && \
conda clean -a