A Fair Experimental Comparison of Neural Network Architectures for Latent Representations of Multi-Omics for Drug Response Prediction

Install Requirements

All requirements are listed in the requirements.txt file. The usage of a virtual environment is recommended.

python3 -m pip install -r requirements.txt

Download Data

Before the experiments can be performed, it is required to download the data sets from Zenodo and extract them into the data folder.

Run Experiments

Algorithm comparison

./algorithm_comparison.sh 

Ablation study

./ablation_study.sh