chore: bump dependencies versions (#462)

* ci: change manual tests running

* ci: change workflow pdm scripts

* chore: change dependencies minimal versions

* fix(pre-commit.ci): auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* chore: regenerate lock file

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.github/workflows/ci-dev.yml

@@ -69,7 +69,7 @@ jobs:
       - name: Regenerate lock with environment markers
         run: pdm lock --update-reuse --strategy inherit_metadata
       - name: Generate requirements.txt
-        run: pdm export --no-default -G docs -G visualization -f requirements -o requirements.txt
+        run: pdm export --no-default -G osm -G voronoi -G gtfs -G plotting -G torch -dG docs -dG visualization -f requirements -o requirements.txt
       - name: Install dependencies
         run: pip install --no-deps -r requirements.txt
       - name: Install nbconvert dependency

.github/workflows/ci-prod.yml

@@ -60,7 +60,7 @@ jobs:
       - name: Regenerate lock with environment markers
         run: pdm lock --update-reuse --strategy inherit_metadata
       - name: Generate requirements.txt
-        run: pdm export --no-default -G docs -G visualization -f requirements -o requirements.txt
+        run: pdm export --no-default -G osm -G voronoi -G gtfs -G plotting -G torch -dG docs -dG visualization -f requirements -o requirements.txt
       - name: Install dependencies
         run: pip install --no-deps -r requirements.txt
       - name: Install nbconvert dependency

.github/workflows/manual_tests.yml

@@ -3,7 +3,7 @@ on: [workflow_dispatch, workflow_call]
 
 jobs:
   run-tests-newest:
-    name: Run tests 🛠️ on multiple systems 🖥️ and Python 🐍 versions
+    name: Run tests 🛠️ on multiple systems 🖥️ and Python 🐍 versions (newest dependencies)
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
@@ -20,6 +20,7 @@ jobs:
     env:
       OS: ${{ matrix.os }}
       PYTHON: ${{ matrix.python-version }}
+      COLUMNS: 120
     steps:
       - uses: actions/checkout@v3
       - name: Setup Python ${{ matrix.python-version }}
@@ -29,27 +30,20 @@ jobs:
       - name: Install pdm
         run: pip install pdm
       - name: Generate lock with newest dependencies
-        run: pdm lock --lockfile pdm.newest.lock --strategy no_cross_platform -dG:all
+        run: pdm lock --lockfile pdm.newest.lock --strategy no_cross_platform -G osm -G voronoi -G gtfs -G plotting -G torch -dG test
       - name: Install srai and tests dependencies
-        run: pdm install --lockfile pdm.newest.lock -dG:all
+        run: pdm install --lockfile pdm.newest.lock -G osm -G voronoi -G gtfs -G plotting -G torch -dG test --skip=post_install
       - name: Run tests with pytest
         run: pdm run pytest -v --durations=20 tests
 
   run-tests-oldest:
-    name: Run tests 🛠️ on multiple systems 🖥️ and Python 🐍 versions
+    name: Run tests 🛠️ on multiple systems 🖥️ and Python 🐍 versions (oldest dependencies)
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
-        include:
-          - os: macos-latest
-            python-version: "3.12"
-          - os: macos-13
-            python-version: "3.12"
-          - os: windows-latest
-            python-version: "3.12"
+        os: [ubuntu-latest, macos-13, macos-latest, windows-latest]
+        python-version: ["3.9"]
     env:
       OS: ${{ matrix.os }}
       PYTHON: ${{ matrix.python-version }}
@@ -62,8 +56,8 @@ jobs:
       - name: Install pdm
         run: pip install pdm
       - name: Generate lock with oldest dependencies
-        run: pdm lock --lockfile pdm.oldest.lock --strategy no_cross_platform,direct_minimal_versions -dG:all
+        run: pdm lock --lockfile pdm.oldest.lock --strategy no_cross_platform,direct_minimal_versions -G osm -G voronoi -G gtfs -G plotting -G torch -dG test
       - name: Install srai and tests dependencies
-        run: pdm install --lockfile pdm.oldest.lock -dG:all
+        run: pdm install --lockfile pdm.oldest.lock -G osm -G voronoi -G gtfs -G plotting -G torch -dG test --skip=post_install
       - name: Run tests with pytest
         run: pdm run pytest -v --durations=20 tests

.pre-commit-config.yaml

@@ -3,12 +3,12 @@
 default_stages: [commit]
 repos:
   - repo: https://github.com/compilerla/conventional-pre-commit
-    rev: v3.2.0
+    rev: v3.4.0
     hooks:
       - id: conventional-pre-commit
         stages: [commit-msg]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: 'v0.3.7'
+    rev: 'v0.5.6'
     hooks:
       - id: ruff
         types_or: [ python, pyi, jupyter ]
@@ -22,13 +22,13 @@ repos:
         additional_dependencies: [tomli]
         args: ["--in-place", "--config", "./pyproject.toml"]
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.9.0
+    rev: v1.11.1
     hooks:
       - id: mypy
         args: ["--config-file", "pyproject.toml"]
         additional_dependencies: ['types-requests', 'types-six']
   - repo: https://github.com/pdm-project/pdm
-    rev: 2.14.0
+    rev: 2.17.3
     hooks:
       - id: pdm-lock-check
       - id: pdm-export