BioCodec: Biosignal Tokenization Module

Official implementation for the paper "Neural Codecs as Biosignal Tokenizers".

We recommend a conda environment with Python >= 3.12 :

conda create -n biocodec python=3.12
conda activate biocodec

Install the dependencies:

cd BioCodec
pip install -r requirements.txt

You can run BioCodec on a random sample:

python -m biocodec.model

Acknowledgements

In this study we made use of the following repositories:

• encodec-pytorch

Citation

If you use BioCodec in your work, please consider citing the original study:

@article{avramidis2025neural,
  title={Neural Codecs as Biosignal Tokenizers},
  author={Avramidis, Kleanthis and Feng, Tiantian and Jeong, Woojae and Lee, Jihwan and Cui, Wenhui and Leahy, Richard M and Narayanan, Shrikanth},
  journal={arXiv preprint arXiv:2510.09095},
  year={2025}
}