Add wave post jobs to GEFS (NOAA-EMC#2292)

Adds the wave post jobs for gridded and points to GEFS. Boundary
point jobs are added even though the current GEFS buoy file does
not contain any (tested by manually subbing in the GFS buoy file).

Resolves NOAA-EMC#827

parm/config/gefs/config.base.emc.dyn

@@ -144,7 +144,7 @@ export DO_OCN="NO"
 export DO_ICE="NO"
 export DO_AERO="NO"
 export WAVE_CDUMP="" # When to include wave suite: gdas, gfs, or both
-export DOBNDPNT_WAVE="NO"
+export DOBNDPNT_WAVE="NO" # The GEFS buoys file does not currently have any boundary points
 export FRAC_GRID=".true."
 
 # Set operational resolution

parm/config/gefs/config.resources

@@ -68,6 +68,15 @@ esac
 export npe_node_max
 
 case ${step} in
+
+  "stage_ic")
+    export wtime_stage_ic="00:15:00"
+    export npe_stage_ic=1
+    export npe_node_stage_ic=1
+    export nth_stage_ic=1
+    export is_exclusive=True
+    ;;
+
   "waveinit")
     export wtime_waveinit="00:10:00"
     export npe_waveinit=12
@@ -77,25 +86,10 @@ case ${step} in
     export memory_waveinit="2GB"
     ;;
 
-  "wavepostsbs")
-    export wtime_wavepostsbs="00:20:00"
-    export wtime_wavepostsbs_gfs="03:00:00"
-    export npe_wavepostsbs=8
-    export nth_wavepostsbs=1
-    export npe_node_wavepostsbs=$(( npe_node_max / nth_wavepostsbs ))
-    export NTASKS=${npe_wavepostsbs}
-    export memory_wavepostsbs="10GB"
-    export memory_wavepostsbs_gfs="10GB"
-    ;;
-
   "fcst" | "efcs")
     export is_exclusive=True
 
-    if [[ "${step}" == "fcst" ]]; then
-      _CDUMP_LIST=${CDUMP:-"gdas gfs"}
-    elif [[ "${step}" == "efcs" ]]; then
-      _CDUMP_LIST=${CDUMP:-"enkfgdas enkfgfs"}
-    fi
+    _CDUMP_LIST=${CDUMP:-"gdas gfs"}
 
     # During workflow creation, we need resources for all CDUMPs and CDUMP is undefined
     for _CDUMP in ${_CDUMP_LIST}; do
@@ -224,11 +218,39 @@ case ${step} in
     export is_exclusive=True
     ;;
 
-  "stage_ic")
-    export wtime_stage_ic="00:15:00"
-    export npe_stage_ic=1
-    export npe_node_stage_ic=1
-    export nth_stage_ic=1
+  "wavepostsbs")
+    export wtime_wavepostsbs="03:00:00"
+    export npe_wavepostsbs=1
+    export nth_wavepostsbs=1
+    export npe_node_wavepostsbs=$(( npe_node_max / nth_wavepostsbs ))
+    export NTASKS=${npe_wavepostsbs}
+    export memory_wavepostsbs="10GB"
+    ;;
+
+  "wavepostbndpnt")
+    export wtime_wavepostbndpnt="01:00:00"
+    export npe_wavepostbndpnt=240
+    export nth_wavepostbndpnt=1
+    export npe_node_wavepostbndpnt=$(( npe_node_max / nth_wavepostbndpnt ))
+    export NTASKS=${npe_wavepostbndpnt}
+    export is_exclusive=True
+    ;;
+
+  "wavepostbndpntbll")
+    export wtime_wavepostbndpntbll="01:00:00"
+    export npe_wavepostbndpntbll=448
+    export nth_wavepostbndpntbll=1
+    export npe_node_wavepostbndpntbll=$(( npe_node_max / nth_wavepostbndpntbll ))
+    export NTASKS=${npe_wavepostbndpntbll}
+    export is_exclusive=True
+    ;;
+
+  "wavepostpnt")
+    export wtime_wavepostpnt="04:00:00"
+    export npe_wavepostpnt=200
+    export nth_wavepostpnt=1
+    export npe_node_wavepostpnt=$(( npe_node_max / nth_wavepostpnt ))
+    export NTASKS=${npe_wavepostpnt}
     export is_exclusive=True
     ;;
 
@@ -239,4 +261,4 @@ case ${step} in
 
 esac
 
-echo "END: config.resources"
+echo "END: config.resources"

parm/config/gefs/config.wavepostbndpnt

@@ -0,0 +1,11 @@
+#! /usr/bin/env bash
+
+########## config.wavepostbndpnt ##########
+# Wave steps specific
+
+echo "BEGIN: config.wavepostbndpnt"
+
+# Get task specific resources
+source "${EXPDIR}/config.resources" wavepostbndpnt
+
+echo "END: config.wavepostbndpnt"

parm/config/gefs/config.wavepostbndpntbll

@@ -0,0 +1,11 @@
+#! /usr/bin/env bash
+
+########## config.wavepostbndpntbll ##########
+# Wave steps specific
+
+echo "BEGIN: config.wavepostbndpntbll"
+
+# Get task specific resources
+source "${EXPDIR}/config.resources" wavepostbndpntbll
+
+echo "END: config.wavepostbndpntbll"

parm/config/gefs/config.wavepostpnt

@@ -0,0 +1,11 @@
+#! /usr/bin/env bash
+
+########## config.wavepostpnt ##########
+# Wave steps specific
+
+echo "BEGIN: config.wavepostpnt"
+
+# Get task specific resources
+source "${EXPDIR}/config.resources" wavepostpnt
+
+echo "END: config.wavepostpnt"

parm/config/gefs/config.wavepostsbs

@@ -0,0 +1,28 @@
+#! /usr/bin/env bash
+
+########## config.wavepostsbs ##########
+# Wave steps specific
+
+echo "BEGIN: config.wavepostsbs"
+
+# Get task specific resources
+source "${EXPDIR}/config.resources" wavepostsbs
+
+# Subgrid info for grib2 encoding
+export WAV_SUBGRBSRC=""
+export WAV_SUBGRB=""
+
+# Options for point output (switch on/off boundary point output)
+export DOIBP_WAV='NO' # Input boundary points
+export DOFLD_WAV='YES' # Field data
+export DOPNT_WAV='YES' # Station data
+export DOGRB_WAV='YES' # Create grib2 files
+if [[ -n "${waveinterpGRD}" ]]; then
+    export DOGRI_WAV='YES' # Create interpolated grids
+else
+    export DOGRI_WAV='NO' # Do not create interpolated grids
+fi
+export DOSPC_WAV='YES' # Spectral post
+export DOBLL_WAV='YES' # Bulletin post
+
+echo "END: config.wavepostsbs"

parm/config/gfs/config.wavepostbndpnt

@@ -6,6 +6,6 @@
 echo "BEGIN: config.wavepostbndpnt"
 
 # Get task specific resources
-. $EXPDIR/config.resources wavepostbndpnt
+source "${EXPDIR}/config.resources" wavepostbndpnt
 
 echo "END: config.wavepostbndpnt"

parm/config/gfs/config.wavepostbndpntbll

@@ -6,6 +6,6 @@
 echo "BEGIN: config.wavepostbndpntbll"
 
 # Get task specific resources
-. $EXPDIR/config.resources wavepostbndpntbll
+source "${EXPDIR}/config.resources" wavepostbndpntbll
 
 echo "END: config.wavepostbndpntbll"

parm/config/gfs/config.wavepostpnt

@@ -6,6 +6,6 @@
 echo "BEGIN: config.wavepostpnt"
 
 # Get task specific resources
-. $EXPDIR/config.resources wavepostpnt
+source "${EXPDIR}/config.resources" wavepostpnt
 
 echo "END: config.wavepostpnt"

parm/config/gfs/config.wavepostsbs

@@ -6,7 +6,7 @@
 echo "BEGIN: config.wavepostsbs"
 
 # Get task specific resources
-. $EXPDIR/config.resources wavepostsbs
+source "${EXPDIR}/config.resources" wavepostsbs
 
 # Subgrid info for grib2 encoding
 export WAV_SUBGRBSRC=""

scripts/exgfs_wave_post_pnt.sh

@@ -156,7 +156,11 @@ source "$HOMEgfs/ush/preamble.sh"
     cp -f $PARMwave/wave_${NET}.buoys buoy.loc.temp
     if [ "$DOBNDPNT_WAV" = YES ]; then
       #only do boundary points
-      sed -n '/^\$.*/!p' buoy.loc.temp | grep IBP > buoy.loc
+      sed -n '/^\$.*/!p' buoy.loc.temp | grep IBP > buoy.loc || {
+          echo "WARNING: No boundary points found in buoy file ${PARMwave}/wave_${NET}.buoys"
+          echo "         Ending job without doing anything."
+          exit 0
+        }
     else
       #exclude boundary points
       sed -n '/^\$.*/!p' buoy.loc.temp | grep -v IBP > buoy.loc

workflow/applications/gefs.py

@@ -20,7 +20,9 @@ def _get_app_configs(self):
             configs += ['efcs']
 
         if self.do_wave:
-            configs += ['waveinit']
+            configs += ['waveinit', 'wavepostsbs', 'wavepostpnt']
+            if self.do_wave_bnd:
+                configs += ['wavepostbndpnt', 'wavepostbndpntbll']
 
         return configs
 
@@ -47,4 +49,10 @@ def get_task_names(self):
 
         tasks += ['atmprod']
 
+        if self.do_wave:
+            tasks += ['wavepostsbs']
+            if self.do_wave_bnd:
+                tasks += ['wavepostbndpnt', 'wavepostbndpntbll']
+            tasks += ['wavepostpnt']
+
         return {f"{self._base['CDUMP']}": tasks}