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  1. MSc_Dissertation_Kvass MSc_Dissertation_Kvass Public

    Integrated 16S rRNA and shotgun metagenomic analysis of sourdough-based kvass fermentation. Explores how dietary fibre addition shapes microbial composition and metabolic potential using QIIME2, Me…

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  2. RNAseq_Isl1_Knockout RNAseq_Isl1_Knockout Public

    RNA-seq analysis of Isl1 knockout vs wild-type mouse allantois (GSE247182) using DESeq2 and fgsea for pathway enrichment.

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  3. NGS_Genomics_Workflow NGS_Genomics_Workflow Public

    Comparative analysis of next-generation sequencing and genome assembly strategies in Pleurodeles waltl and related vertebrate genomes — MSc Bioinformatics NGS coursework

  4. BPSM_Scripting_Tools BPSM_Scripting_Tools Public

    Practice scripts and cheat sheets for BPSM coursework — Linux, Bash, AWK, Python, Git, and HPC (Eddie) exercises for MSc Bioinformatics at the University of Edinburgh.

    Shell

  5. BioDB_SQL_API_Project BioDB_SQL_API_Project Public

    Integration of Ensembl, UniProt, KEGG, and miRBase using R, MySQL, and REST APIs. Demonstrates bioinformatics database design, data retrieval, and relational integration through R–SQL pipelines.

    R

  6. Web_Bioinformatics_Tool Web_Bioinformatics_Tool Public

    PHP/MySQL web application for sequence retrieval, motif scanning, and conservation visualization using EMBOSS tools.

    PHP