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Fixes this problem on windows: #232
Was able to reproduce on windows and fix with this.
It breaks because on windows the default value for the output of np.sum is an int32 causing overflow, while default is 64 bit on linux/mac. Same behavior with np.cumsum (the first implementation of prepare.py), so it seems like it has been overflowing from day 1 on windows, but only now people have noticed?
Tbh this just seems like stupid default behavior from numpy? Why not just force it to int64 on windows and avoid this, while letting people manually change it if needed.