This repository is short RNA-seq workshop covering one of the simplest workflows starting with data download and finishing at differential expression calling.
The tutorial.rst file covers the first part of our workshops, while workshop.sh is basicaly solution of this part (TODO).
This repository contains just tutorial materials and solution script that can perform all covered analysis. To download raw data use script download_raw_data.sh that can be find in main directory.
Tutorial assumes that user have access to following programs and packages: + fastq-dump + fastqc + multiqc + cutadapt + salmon + R