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v2.6.0
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kaizhang committed Mar 9, 2024
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11 changes: 6 additions & 5 deletions docs/changelog.md
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# Release Notes

## Development version (unreleased)
## Release 2.6.0 (released March 9, 2024)

### Features:
- Add a argument `counting_strategy` to `pp.add_tile_matrix`, `pp.make_peak_matrix`, and `pp.make_gene_matrix`, which allows one to use different strategies
(insertion-based, fragment-based, or paired insertion counting) to compute feature counts.
- Fix #233: Add Apple silicon wheel files.

### Bugs fixed:

- Fix: #221: 'pp.knn' with 'method=pynndescent' invalid csr matrix.
- Fix: #226: Backed AnnData does not support numpy string array.
- Fix: #232: `tempdir` is not respected in `tl.macs3`.
- Fix: #242: Change default value of `min_len` to `extsize` in `tl.macs3`, in order to be
- Fix #221: 'pp.knn' with 'method=pynndescent' invalid csr matrix.
- Fix #226: Backed AnnData does not support numpy string array.
- Fix #232: `tempdir` is not respected in `tl.macs3`.
- Fix #242: Change default value of `min_len` to `extsize` in `tl.macs3`, in order to be
consistent with the `macs3` command line tool.
- Other minor bug fixes.

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2 changes: 1 addition & 1 deletion snapatac2-python/Cargo.lock

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2 changes: 1 addition & 1 deletion snapatac2-python/Cargo.toml
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[package]
name = "snapatac2"
version = "2.5.4-dev4"
version = "2.6.0"
edition = "2021"
authors = ["Kai Zhang <kai@kzhang.org>"]
description = "Rust APIs"
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