MoBIE is a Fiji plugin for exploring and sharing big multi-modal image and associated tabular data.
The MoBIE was initially developed to explore a cellular atlas for the biological model system Platynereis dumerilii, see: Whole-body integration of gene expression and single-cell morphology. However, the framework turned out to be so useful and generalisable that it is now used for other projects as well, e.g. see all the repositories ending on "-project" here.
If you use MoBIE, please cite the Nature Methods MoBIE publication:
Pape, C., Meechan, K., Moreva, E. et al. MoBIE: a Fiji plugin for sharing and exploration of multi-modal cloud-hosted big image data. Nat Methods (2023). https://doi.org/10.1038/s41592-023-01776-4
Detailed tutorials for installing & using MoBIE are available at https://mobie.github.io/.
- Please install Fiji on your computer.
- Restart Fiji and install the MoBIE update site (how to install an update site).
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MoBIE
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- Restart Fiji
- In the Fiji search bar, type: "mobie"
...and click [ Run ] - Enter a github repository (e.g.,
https://github.com/mobie/platybrowser-project) representing your datasets
- The MoBIE viewer is ready to be used:
