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Commits on Nov 6, 2019

• Fix configure --with-bcf-plugin-path

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Commits on Nov 5, 2019

• Update print statements to be both Python 2 and 3 compatible

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Commits on Sep 20, 2019

• Check that a filename has been provided [minor]

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• Fix Makefile dependencies

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Commits on Jul 31, 2019

• Avoid non-portable uname -o option and only invoke uname once

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• Add vcfsort error message; suppress various compiler warnings

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Commits on Sep 13, 2018

• Silence warnings [minor]

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Commits on Jul 18, 2018

• Use utility function to clamp lookup table index

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Commits on Jul 6, 2018

• Add missing Makefile dependencies

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Commits on Jun 27, 2018

• Use bgzf_open() to read FASTA file

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Commits on Dec 14, 2016

• Fix warnings due to newly-const tbx_conf_* presets

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Commits on Jul 25, 2016

• Fix typo

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Commits on May 27, 2016

• Avoid segfault when QUAL < 0

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Commits on May 24, 2016

• Merge concat --naive for vcf.gz file (PR samtools#418)

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• Fix test_cmd(exp=>"expected") when test fails

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Commits on May 17, 2016

• Refactorings and warning preventions [minor]

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Commits on May 16, 2016

• Merge mcall trim alleles and population priors (PR samtools#417)

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Commits on May 12, 2016

• Avoid angle brackets around option arguments

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Commits on May 11, 2016

• Use bcf_hdr_format() rather than deprecated bcf_hdr_fmt_text()

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Commits on Apr 22, 2016

• Merge version number bump from master

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• Release 1.3.1: bug fixes, new GTisec plugin

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Commits on Mar 31, 2016

• Fix docs grammar [minor]

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Commits on Mar 16, 2016

• Check return codes from bgzf_read() / bgzf_write() calls

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• Mark error() as HTS_NORETURN

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Commits on Mar 15, 2016

• getopt_long() returns int, not char

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Commits on Feb 1, 2016

• Fix merging of Number=G format strings

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Commits on Dec 15, 2015

• Merge version number bump from master

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• Release 1.3: various new options, plugins, and bug fixes

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Commits on Nov 10, 2015

• Fix error message segfault [minor]

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• Dynamically export bcftools symbols to plugins

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Commits on Sep 14, 2015

• Merge norm -m- test (PR samtools#315)

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Commits on Sep 2, 2015

• Fix whitespace [trivial]

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• Avoid using C99 NAN macro

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• Merge new handling of ploidy (PR samtools#313)

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Commits on Aug 7, 2015

• Check that opening chain and output files succeeded

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