Implement reduction for DIPOL instrument #113
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| # by not building all branches on push, we avoid the duplicated builds in PRs | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '**' | |
| pull_request: | |
| env: | |
| NUMBA_NUM_THREADS: 1 | |
| MPLBACKEND: Agg | |
| PYTEST_ADDOPTS: --color=yes | |
| jobs: | |
| static-code-checks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10.9" | |
| tests: | |
| strategy: | |
| matrix: | |
| include: | |
| - python-version: "3.10.9" | |
| os: ubuntu-latest | |
| - python-version: "3.11" | |
| os: ubuntu-latest | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Build the package | |
| run: | | |
| pip install build | |
| python -m build | |
| - name: Install the package | |
| run: pip install .[test] | |
| - name: Install the package in editable mode with all additional dependencies | |
| run: pip install --editable .[all] | |
| - name: Install httpdirfs to access astrometry index files without downloading them | |
| run: sudo apt install httpdirfs | |
| # - name: Try to restore httpdirfs cache data | |
| # # this should make subsuquent commits in the same PR faster | |
| # uses: actions/cache@/restore@v3 | |
| # with: | |
| # path: $HOME/.cache/httpdirfs/ | |
| # key: httpdirfs-astrometry-5200-1-2-3-4 | |
| - name: Mount astrometry index file in default location | |
| run: mkdir -p $HOME/.astrometry_cache/5200 && httpdirfs --cache 'https://portal.nersc.gov/project/cosmo/temp/dstn/index-5200/LITE/' $HOME/.astrometry_cache/5200/ | |
| - name: Check that it was correctly mounted | |
| run: ls $HOME/.astrometry_cache/5200/index-5200-00.fits | |
| - name: Download test data | |
| env: | |
| TEST_DATA_PASSWORD: ${{ secrets.test_data_password }} | |
| run: | | |
| export TESTDATA_MD5SUM=`grep 'TESTDATA_MD5SUM' ./tests/conftest.py | awk -F"'" '{print $2}' | tr -d '\n'` | |
| wget --post-data "pass=$TEST_DATA_PASSWORD" "https://vhega.iaa.es/iop4/iop4testdata.tar.gz?md5sum=$TESTDATA_MD5SUM" -O $HOME/iop4testdata.tar.gz | |
| - name: Run tests (with -o log_cli=true -o log_cli_level=DEBUG to debug CI actions) | |
| run: pytest -o log_cli=true -o log_cli_level=DEBUG -vxs tests/ | |
| - name: Output some info for debugging | |
| # | true so erros in this step are ignored | |
| run: | | |
| df -h || true | |
| du -sh $HOME/.cache/httpdirfs/ || true | |
| # - name: Save httpdirfs cache data | |
| # uses: actions/cache/save@v3 | |
| # with: | |
| # path: $HOME/.cache/httpdirfs/ | |
| # key: httpdirfs-astrometry-5200-1-2-3-4 | |
| docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10.9" | |
| - name: Update pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Install doc dependencies | |
| run: | | |
| pip install -e .[doc] | |
| python -c 'import iop4lib; print(iop4lib.__version__)' | |
| - name: Build docs | |
| run: cd docs && make html |