Fix auto flagging (#152) #641
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| name: CI | |
| # by not building all branches on push, we avoid the duplicated builds in PRs | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '**' | |
| pull_request: | |
| concurrency: | |
| # cancel previous runs of the same workflow for the same PR when new commits are pushed | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| NUMBA_NUM_THREADS: 1 | |
| MPLBACKEND: Agg | |
| PYTEST_ADDOPTS: --color=yes | |
| jobs: | |
| static-code-checks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| tests: | |
| runs-on: [self-hosted, x64, Linux, ubuntu, generic] | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| python-version: ["3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Install required packages | |
| run: | | |
| sudo apt-get -y install gcc | |
| - name: Build the package | |
| run: | | |
| pip install build | |
| python -m build | |
| - name: Install the package | |
| run: pip install .[test] | |
| - name: Install the package in editable mode with all additional dependencies | |
| run: pip install --editable .[all] | |
| - name: Extract test data version from source code | |
| env: | |
| TEST_DATA_PASSWORD: ${{ secrets.test_data_password }} | |
| run: | | |
| export TESTDATA_MD5SUM=`grep 'TESTDATA_MD5SUM' ./tests/conftest.py | awk -F"'" '{print $2}' | tr -d '\n'` | |
| echo "TESTDATA_MD5SUM=$TESTDATA_MD5SUM" >> $GITHUB_ENV | |
| - name: Use mounted astrometry index files and test dataset | |
| run: | | |
| ln -s /mnt/astrometry_cache $HOME/.astrometry_cache | |
| ln -s /mnt/test_datasets/iop4testdata.$TESTDATA_MD5SUM.tar.gz $HOME/iop4testdata.$TESTDATA_MD5SUM.tar.gz | |
| - name: Check that index files and test dataset were correctly mounted | |
| run: | | |
| ls -lh $HOME/.astrometry_cache/5200/index-5200-00.fits | |
| ls -lh $HOME/iop4testdata.$TESTDATA_MD5SUM.tar.gz | |
| - name: Run tests (with -o log_cli=true -o log_cli_level=DEBUG to debug CI actions) | |
| run: pytest -o log_cli=true -o log_cli_level=DEBUG -vxs tests | |
| docs: | |
| runs-on: [self-hosted, x64, Linux, ubuntu, generic] | |
| # Don't run if this is a tag push, already done during docs deployment (docs.yml) | |
| if: ${{ !startsWith(github.ref, 'refs/tags/v') }} | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| python-version: ["3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| - name: Install required packages | |
| run: | | |
| sudo apt-get -y install pandoc make gcc | |
| - name: Install doc dependencies | |
| run: | | |
| pip install -e .[doc] | |
| python -c 'import iop4lib; print(iop4lib.__version__)' | |
| - name: Extract test data version from source code | |
| env: | |
| TEST_DATA_PASSWORD: ${{ secrets.test_data_password }} | |
| run: | | |
| export TESTDATA_MD5SUM=`grep 'TESTDATA_MD5SUM' ./tests/conftest.py | awk -F"'" '{print $2}' | tr -d '\n'` | |
| echo "TESTDATA_MD5SUM=$TESTDATA_MD5SUM" >> $GITHUB_ENV | |
| - name: Use mounted astrometry index files and test dataset | |
| run: | | |
| ln -s /mnt/astrometry_cache $HOME/.astrometry_cache | |
| ln -s /mnt/test_datasets/iop4testdata.$TESTDATA_MD5SUM.tar.gz $HOME/iop4testdata.$TESTDATA_MD5SUM.tar.gz | |
| - name: Check that index files and test dataset were correctly mounted | |
| run: | | |
| ls -lh $HOME/.astrometry_cache/5200/index-5200-00.fits | |
| ls -lh $HOME/iop4testdata.$TESTDATA_MD5SUM.tar.gz | |
| - name: Extract test data in the default data folder | |
| run: | | |
| tar -xzf $HOME/iop4testdata.$TESTDATA_MD5SUM.tar.gz -C $HOME | |
| mv $HOME/iop4testdata $HOME/.iop4data | |
| - name: Create the DB | |
| run: | | |
| python iop4site/manage.py makemigrations | |
| python iop4site/manage.py makemigrations iop4api | |
| python iop4site/manage.py migrate --no-input | |
| python iop4site/manage.py loaddata $HOME/.iop4data/testcatalog.yaml | |
| ls -lh $HOME/.iop4data/ | |
| - name: Run iop4 on the test data | |
| run: iop4 --list-local | |
| - name: Build docs | |
| run: make docs-sphinx |