use ivar default of 30 for illuminaKeepLen, and comment (connor-lab#61)

Co-authored-by: David K. Jackson <david.jackson@physics.org>
jts · Jul 14, 2020 · 42d198f · 42d198f
1 parent 58b3afa
commit 42d198f
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/conf/coguk/sanger.config b/conf/coguk/sanger.config
@@ -1,4 +1,7 @@
+// params for seqeuncing libraries ligating/tailing adapters to amplicon
 params.allowNoprimer = false
+params.illuminaKeepLen = 30  // ivar default (or higher good for this library type)
+// samtools <=1.10 mpileup does not limit depth well (for high depth, common read start locii)
 params.mpileupDepth = 0
 
 executor {