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teunbrand committed Feb 21, 2021
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2 changes: 1 addition & 1 deletion README.Rmd
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## Footnote

I would like to mention that there are also packages that do some similar things to what this package does. [facetscales](https://github.com/zeehio/facetscales) also has a facet function wherein scales can set per row/colum. The [relayer](https://github.com/clauswilke/relayer) and [ggnewscale](https://github.com/cran/ggnewscale) packages also allow multiple colour scales in the same plot.
I would like to mention that there are also packages that do some similar things to what this package does. [facetscales](https://github.com/zeehio/facetscales) also has a facet function wherein scales can set per row/colum. The [egg](https://github.com/jwdink/egg) package can also set panel sizes. The [lemon](https://github.com/stefanedwards/lemon) package also has options to tweak position axes. The [relayer](https://github.com/clauswilke/relayer) and [ggnewscale](https://github.com/cran/ggnewscale) packages also allow multiple colour scales in the same plot.

Historically, many of these functions come from the [ggnomics](https://github.com/teunbrand/ggnomics) package, but have been moved here as a package independent of Bioconductor infrastructure.

31 changes: 17 additions & 14 deletions README.md
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Expand Up @@ -35,45 +35,45 @@ devtools::install_github("teunbrand/ggh4x")
There are a few topics explored in the package’s vignettes with
examples. Links to these topics are below.

- Options to tailor
- Options to tailor
[facets](https://teunbrand.github.io/ggh4x/articles/Facets.html),
including:
- [Nested
- [Nested
facets](https://teunbrand.github.io/ggh4x/articles/Facets.html#nested-facets)
that have strips that can span multiple panels.
- Adjusting the [position
- Adjusting the [position
scales](https://teunbrand.github.io/ggh4x/articles/Facets.html#position-scales)
on a per-panel basis.
- Varying the [size of
- Varying the [size of
panels](https://teunbrand.github.io/ggh4x/articles/Facets.html#sizes)
without being limited to the global `aspect.ratio` or fixed
coordinates.
- ggh4x has some [position
- ggh4x has some [position
guides](https://teunbrand.github.io/ggh4x/articles/PositionGuides.html)
that change the way x- and y-axes look. You can:
- include the [minor breaks as minor tick
- include the [minor breaks as minor tick
marks](https://teunbrand.github.io/ggh4x/articles/PositionGuides.html#minor-ticks).
- detail log<sub>10</sub> axes with [logarithmic
- detail log<sub>10</sub> axes with [logarithmic
tickmarks](https://teunbrand.github.io/ggh4x/articles/PositionGuides.html#logarithmic-ticks).
- indicate [nested
- indicate [nested
relations](https://teunbrand.github.io/ggh4x/articles/PositionGuides.html#nested-relations)
in discrete axes.
- mirror the results of hierarchical clustering with [dendrogram
- mirror the results of hierarchical clustering with [dendrogram
axes](https://teunbrand.github.io/ggh4x/articles/PositionGuides.html#dendrograms)
with help from the **ggdendro** package.
- There are some [stat
- There are some [stat
layers](https://teunbrand.github.io/ggh4x/articles/Statistics.html)
that can make it easier to plot. These stat layers can:
- overlaying the [theoretical
- overlaying the [theoretical
density](https://teunbrand.github.io/ggh4x/articles/Statistics.html#theoretical-densities)
of several distributions, which are computed with the
**fitdistrplus** package.
- draw a trendline of your data with a [rolling
- draw a trendline of your data with a [rolling
kernel](https://teunbrand.github.io/ggh4x/articles/Statistics.html#rolling-kernels).
- plainly [transform x and
- plainly [transform x and
y](https://teunbrand.github.io/ggh4x/articles/Statistics.html#function-x-y)
position in a group-wise manner.
- calculate [run-length
- calculate [run-length
encodings](https://teunbrand.github.io/ggh4x/articles/Statistics.html#run-length-encoding)
of your data.

Expand Down Expand Up @@ -163,6 +163,9 @@ I would like to mention that there are also packages that do some
similar things to what this package does.
[facetscales](https://github.com/zeehio/facetscales) also has a facet
function wherein scales can set per row/colum. The
[egg](https://github.com/jwdink/egg) package can also set panel sizes.
The [lemon](https://github.com/stefanedwards/lemon) package also has
options to tweak position axes. The
[relayer](https://github.com/clauswilke/relayer) and
[ggnewscale](https://github.com/cran/ggnewscale) packages also allow
multiple colour scales in the same plot.
Expand Down
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